Table 2. Number of unique | total TransDecoder-predicted candidate genes with annotations via different search tools and databases (summary of Trinotate results).
| P. cultripes | S. couchii | |
|---|---|---|
| TransDecoder predicted coding regions (ORFs) | 154,906 | 175,331 |
| Protein hits (blastp - SwissProt) | 79,504 | 108,881 | 91,337 | 132,578 |
| Protein hits (blastp – SwissProt vertebrates only) | 77,924 | 107,199 | 89,704 | 130,847 |
| pfam hits (HMMER search) | 65,597 | 91,929 | 76,741 | 112,740 |
| signalP predicted peptides | 3,943 | 10,981 | 4,114 | 13,097 |
| tmHMM predicted transmembrane proteins | 17,990 | 25,833 | 19,881 | 29,991 |
| GO Pfam | 2,471 | 57,308 | 2,583 | 71,966 |
| KEGG | 31,313 | 127,707 | 40,765 | 174,712 |
| EggNOG | 8,125| 117,983 | 8,681| 156,494 |