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. 2019 Jun 19;9(8):2647–2655. doi: 10.1534/g3.119.400389

Table 3. gProfiler enriched Gene Ontology (Biological Processes only) terms and Reactome pathways for P. cultripes and S. couchii. Terms and pathways match highlighted annotations in Figure 3.

Domain Term/Pathway Term/Pathway description Species adj. p value
GO: BP GO:0000375 RNA splicing, via transesterification reactions P. cultripes <0.001
GO: BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile P. cultripes <0.001
GO: BP GO:0000398 mRNA splicing, via spliceosome P. cultripes <0.001
GO: BP GO:0001732 Formation of cytoplasmic translation initiation complex P. cultripes; S. couchii <0.001;<0.001
GO: BP GO:0002181 Cytoplasmic translation P. cultripes; S. couchii <0.001;<0.001
GO: BP GO:0002183 cytoplasmictranslationalinitiation P. cultripes; S. couchii <0.001;<0.001
GO: BP GO:0006099 tricarboxylic acid cycle P. cultripes <0.001
GO: BP GO:0006119 oxidative phosphorylation P. cultripes; S. couchii <0.001;<0.001
GO: BP GO:0006123 mitochondrial electron transport, cytochrome c to oxygen S. couchii <0.001
GO: BP GO:0006413 translational initiation P. cultripes <0.001
GO: BP GO:0006414 translational elongation P. cultripes <0.001
GO: BP GO:0006754 ATP biosynthetic process P. cultripes; S. couchii <0.001;<0.001
GO: BP GO:0008380 RNA splicing P. cultripes <0.001
GO: BP GO:0009060 aerobic respiration P. cultripes <0.001
GO: BP GO:0009141 nucleoside triphosphate metabolic process S. couchii <0.001
GO: BP GO:0009142 nucleoside triphosphate biosynthetic process S. couchii <0.001
GO: BP GO:0009144 purine nucleoside triphosphate metabolic process S. couchii <0.001
GO: BP GO:0009145 purine nucleoside triphosphate biosynthetic process S. couchii <0.001
GO: BP GO:0009199 ribonucleoside triphosphate metabolic process S. couchii <0.001
GO: BP GO:0009201 ribonucleoside triphosphate biosynthetic process S. couchii <0.001
GO: BP GO:0009205 purine ribonucleoside triphosphate metabolic process S. couchii <0.001
GO: BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process S. couchii <0.001
GO: BP GO:0010927 cellular component assembly involved in morphogenesis P. cultripes <0.001
GO: BP GO:0015980 energy derivation by oxidation of organic compounds P. cultripes <0.001
GO: BP GO:0015985 energy coupled proton transport, down electrochemical gradient P. cultripes; S. couchii <0.001;<0.001
GO: BP GO:0015986 ATP synthesis coupled proton transport P. cultripes; S. couchii <0.001;<0.001
GO: BP GO:0019646 aerobic electron transport chain S. couchii <0.001
GO: BP GO:0022618 ribonucleoprotein complex assembly P. cultripes <0.001
GO: BP GO:0022900 electron transport chain P. cultripes; S. couchii <0.001;<0.001
GO: BP GO:0022904 respiratory electron transport chain P. cultripes; S. couchii <0.001;<0.001
GO: BP GO:0030239 myofibril assembly P. cultripes <0.001
GO: BP GO:0042773 ATP synthesis coupled electron transport P. cultripes; S. couchii <0.001;<0.001
GO: BP GO:0042775 mitochondrial ATP synthesis coupled electron transport P. cultripes; S. couchii <0.001;<0.001
GO: BP GO:0045214 sarcomere organization P. cultripes <0.001
GO: BP GO:0045333 cellular respiration P. cultripes <0.001
GO: BP GO:0071826 ribonucleoprotein complex subunit organization P. cultripes <0.001
GO: BP GO:0099132 ATP hydrolysis coupled cation transmembrane transport P. cultripes <0.001
GO: BP GO:0009063 cellular amino acid catabolic process P. cultripes; S. couchii 0.001;<0.001
GO: BP GO:0022613 ribonucleoprotein complex biogenesis P. cultripes 0.001
GO: BP GO:0070972 protein localization to endoplasmic reticulum S. couchii 0.001
GO: BP GO:0045047 protein targeting to ER S. couchii 0.003
GO: BP GO:0072599 establishment of protein localization to endoplasmic reticulum S. couchii 0.003
GO: BP GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c P. cultripes 0.004
GO: BP GO:0031032 actomyosin structure organization P. cultripes 0.004
GO: BP GO:0072376 protein activation cascade P. cultripes; S. couchii 0.004;0.004
GO: BP GO:0072378 blood coagulation, fibrin clot formation P. cultripes; S. couchii 0.004;<0.001
GO: BP GO:0010248 establishment or maintenance of transmembrane electrochemical gradient P. cultripes 0.005
GO: BP GO:0072350 tricarboxylic acid metabolic process S. couchii 0.005
GO: BP GO:1901605 alpha-amino acid metabolic process P. cultripes 0.006
GO: BP GO:1901606 alpha-amino acid catabolic process P. cultripes 0.006
GO: BP GO:0006613 cotranslational protein targeting to membrane S. couchii 0.016
GO: BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane S. couchii 0.016
GO: BP GO:0051258 protein polymerization P. cultripes 0.016
GO: BP GO:0009620 response to fungus P. cultripes; S. couchii 0.018;0.014
GO: BP GO:0046500 S-adenosylmethionine metabolic process S. couchii 0.018
GO: BP GO:0032271 regulation of protein polymerization P. cultripes 0.019
GO: BP GO:0055002 striated muscle cell development P. cultripes 0.021
GO: BP GO:0016054 organic acid catabolic process P. cultripes 0.025
GO: BP GO:0046395 carboxylic acid catabolic process P. cultripes 0.025
GO: BP GO:0034314 Arp2/3 complex-mediated actin nucleation P. cultripes 0.028
GO: BP GO:0015988 energy coupled proton transmembrane transport, against electrochemical gradient P. cultripes 0.029
GO: BP GO:0035384 thioester biosynthetic process P. cultripes 0.029
GO: BP GO:0071616 acyl-CoA biosynthetic process P. cultripes 0.029
GO: BP GO:0000387 spliceosomal snRNP assembly S. couchii 0.031
GO: BP GO:0044282 small molecule catabolic process P. cultripes 0.036
GO: BP GO:0001878 response to yeast P. cultripes; S. couchii 0.038;0.028
GO: BP GO:0015991 ATP hydrolysis coupled proton transport P. cultripes 0.04
GO: BP GO:0090662 ATP hydrolysis coupled transmembrane transport P. cultripes 0.04
GO: BP GO:0099131 ATP hydrolysis coupled ion transmembrane transport P. cultripes 0.04
Reactome REAC:R-XTR-156842 Eukaryotic Translation Elongation P. cultripes <0.001
Reactome REAC:R-XTR-163210 Formation of ATP by chemiosmotic coupling S. couchii <0.001
Reactome REAC:R-XTR-71403 Citric acid cycle (TCA cycle) S. couchii <0.001
Reactome REAC:R-XTR-8949613 Cristae formation S. couchii <0.001
Reactome REAC:R-XTR-390471 Association of TriC/CCT with target proteins during biosynthesis P. cultripes 0.002
Reactome REAC:R-XTR-3371511 HSF1 activation S. couchii 0.009
Reactome REAC:R-XTR-159740 Gamma-carboxylation of protein precursors P. cultripes 0.03
Reactome REAC:R-XTR-196025 Formation of annular gap junctions S. couchii 0.047
Reactome REAC:R-XTR-5625970 RHO GTPases activate KTN1 S. couchii 0.049