Table 1. Gene sets enriched in adherent and swimming form C. fasciculata.
Enriched in adherent | ||||
NAME | KEGG | Size | NES | FDR |
Seleno compound metabolism | ec00450 | 51 | 2.057 | 0.000 |
Biosynthesis of ansamycins | ec01051 | 55 | 1.914 | 0.003 |
Flavonoid biosynthesis | ec00941 | 55 | 1.910 | 0.002 |
Aminoacyl-tRNA biosynthesis | ec00970 | 31 | 1.910 | 0.002 |
Porphyrin and chlorophyll metabolism | ec00860 | 80 | 1.903 | 0.002 |
Biosynthesis of 12-14-and16-membered macrolides | ec00522 | 56 | 1.902 | 0.001 |
Polycyclic aromatic hydrocarbon degradation | ec00624 | 55 | 1.809 | 0.006 |
Stilbenoid diaryl heptanoid and gingerol biosynthesis | ec00945 | 58 | 1.804 | 0.005 |
Anthocyanin biosynthesis | ec00942 | 71 | 1.736 | 0.012 |
Ubiquinone and other terpenoid-quinone biosynthesis | ec00130 | 79 | 1.727 | 0.012 |
Histidine metabolism | ec00340 | 68 | 1.717 | 0.012 |
Insect hormone biosynthesis | ec00981 | 87 | 1.669 | 0.019 |
Cysteine and methionine metabolism | ec00270 | 96 | 1.580 | 0.037 |
Enriched in swimmers | ||||
NAME | KEGG | Size | NES | FDR |
Putative paraflagellar rod proteins | NA | 46 | -2.230 | 0.001 |
Valine leucine and isoleucine degradation | ec00280 | 33 | -2.090 | 0.001 |
Fatty acid degradation | ec00071 | 36 | -2.080 | 0.001 |
Caprolactam degradation | ec00930 | 15 | -1.950 | 0.003 |
Starch and sucrose metabolism | ec00500 | 28 | -1.920 | 0.004 |
Oxidative phosphorylation | ec00190 | 55 | -1.840 | 0.01 |
Fatty acid elongation | ec00062 | 20 | -1.820 | 0.012 |
Glycerolipid metabolism | ec00561 | 39 | -1.760 | 0.02 |
Propanoate metabolism | ec00640 | 50 | -1.720 | 0.026 |
Biosynthesis of unsaturated fatty acids | ec01040 | 22 | -1.710 | 0.028 |
The pathway or gene set name, KEGG pathway ID (where applicable), number of genes (Size), GSEA Normalized Enrichment Score (NES), and False Discovery Rate q-value (FDR) are provided. We considered FDR < 0.05 as enriched. Positive and negative NES scores indicate gene set enrichment in adherent or swimming form cells, respectively.