Table 3.
The significant LP-QTNs detected simultaneously by using three or more ML-GWAS methods.
| QTNs | Chr. | Env. | Pos. | LOD | R2 (%) | ML-GWAS methods |
|---|---|---|---|---|---|---|
| A01_95327880 | A01 | SHZ-2015 | 95.33 | 3.19–5.83 | 7.38–12.54 | 2, 4, 6 |
| A02_74713290 | A02 | SHZ-2014 | 74.71 | 3.48–5.25 | 5.52–7.50 | 1, 2, 5 |
| SHZ-2015 | 74.71 | 4.73–6.05 | 9.09–11.52 | 1, 2, 4, 5, 6 | ||
| A02_75551547 | A02 | AY-2014 | 75.55 | 6.95–8.71 | 8.41–14.28 | 1, 2, 5 |
| SHZ-2014 | 75.55 | 5.45–7.94 | 8.98–14.35 | 1, 2, 4 | ||
| A05_12957926 | A05 | AY-2014 | 12.96 | 3.60–6.87 | 5.25–9.16 | 1, 2,3 |
| SHZ-2014 | 12.96 | 3.35–8.28 | 4.62–9.58 | 1, 2, 3, 4, 6 | ||
| A05_40135551 | A05 | SHZ-2015 | 40.14 | 3.69–4.46 | 2.42–5.64 | 2, 5, 6, |
| A09_68324802 | A09 | SHZ-2015 | 68.32 | 3.02–3.79 | 3.96–5.93 | 3, 4, 6 |
| D03_15827361 | D03 | AY-2015 | 15.83 | 3.19–5.84 | 6.45–9.76 | 1, 4, 6 |
| D03_46455827 | D03 | SHZ-2014 | 46.46 | 3.12–4.66 | 1.81–4.27 | 3, 4, 5 |
| D05_58804007 | D05 | AY-2015 | 58.8 | 3.65–5.14 | 7.23–10.65 | 2, 4, 5, 6 |
| D12_36345100 | D12 | AY-2015 | 36.35 | 3.09–6.08 | 4.91–13.69 | 1, 2, 3, 4, 6 |
| D13_55027992 | D13 | AY-2014 | 13.55 | 3.54–3.61 | 2.08–6.50 | 1, 2, 5 |
QTNs, quantitative trait nucleotides; Env., environment; Chr., chromosome; Pos., position; AY, Anyang; SHZ, Shihezi. LOD, the significance levels; R2, the percentage of phenotypic variation explained by each QTN; ML-GWAS, multi-locus GWAS; mrMLM, FASTmrMLM, FASTmrEMMA, ISIS EM-BLASSO, pLARmEB and pKWmEB are marked by 1 to 6, respectively.