Table 1.

Datasets used to test DiscoverY

Dataset				Reads			Assembly
Species	Sex	Tech nology	Sample	Read length	Read number	Autosome coverage depth	Contig number	Contig N50	Total length (gb)	Y1 length (mb)
human	M	Illumina	NA24385	250 bp	883 mil	60x	65,436	169 kb	2.84	18
human	M	10X	NA24385	151 bp	477 mil	20x	359,515	24 kb	7.71	24
human	M	PacBio	NA24385	10kb2	13 mil	30x	12,523	4.5 mb	2.99	18
human	F	Illumina	NA12878	148 bp	5.5 bil	300x	N/A
human	F	mixed	hg38 - Y	N/A			23	156.0 mb	3.03	N/A
human	F	10X	NA12878	N/A			21,562	16.2 mb	2.85	N/A
human	F	PacBio	NA12878	N/A			18,903	26.8 mb	3.17	N/A
gorilla	M	Illumina	see Methods	150 bp	406 mil	20x	N/A
gorilla	M	N/A	gorGor5 + gorY	N/A			16,329	9.6 mb	3.10	25
gorilla	F	Illumina	Gg6	150 bp	141 mil	7x	N/A

¹Length of contigs aligning to the reference Y chromosome. For gorilla male, this is known directly from the construction, rather than through alignment

²Read N50 is shown instead of length, since the length varies