Table 5.
Comparison of genotyping with core and NS5B sequences
| Core | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| NS5B | 1b | 1e | 1 h | 1nc | 2nc | 4c | 4f | 4p | 4nc | No amplication | Total |
| 1b | 2 | 2 | |||||||||
| 1c | 1 | 1 | |||||||||
| 1 h | 9 | 1 | 10 | ||||||||
| 1 l | 22 | 22 | |||||||||
| 1nc | 38 | 1 | 34 | 1 | 1 | 9 | 84 | ||||
| 2a | 2 | 2 | |||||||||
| 2nc | 75 | 8 | 83 | ||||||||
| 4c | 1 | 1 | |||||||||
| 4f | 7 | 70 | 3 | 80 | |||||||
| 4nc | 3 | 27 | 1 | 31 | |||||||
| 4o | 1 | 1 | |||||||||
| 4p | 13 | 13 | |||||||||
| 4 t | 7 | 1 | 8 | ||||||||
| No amplication | 11 | 4 | 5 | 1 | 1 | 9 | 31 | ||||
| Total | 2 | 49 | 1 | 70 | 82 | 2 | 11 | 1 | 128 | 23 | 369 |
nc, not classified. Samples with discordant genotypes in core and NS5B regions (putative recombinants or multiple infections) are shown in bold and those were the subtype was not determined in one region but classified by the second region are underlined