TABLE 3.
GO enrichment of genes upregulated by Maribacter sp. in the presence of SIP+ (SIP + M vs. SIP).
| Upregulated in response to Maribacter sp. in presence of SIP+ | |||
| GO ID | Description | Genes | p-value |
| Biological functions | |||
| GO:0006779 | Porphyrin-containing compound biosynthetic process | 9 | 8.40E−09 |
| GO:0009768 | Photosynthesis, light harvesting in photosystem I | 4 | 2.50E−05 |
| GO:0015994 | Chlorophyll metabolic process | 5 | 2.70E−05 |
| GO:0010218 | Response to far red light | 4 | 4.60E−04 |
| GO:0010114 | Response to red light | 4 | 8.40E−04 |
| GO:0016116 | Carotenoid metabolic process | 3 | 1.44E−03 |
| GO:0055114 | Oxidation–reduction process | 23 | 1.79E−03 |
| GO:0009637 | Response to blue light | 4 | 2.43E−03 |
| GO:0042374 | Phylloquinone metabolic process | 2 | 3.43E−03 |
| GO:0070127 | tRNA aminoacylation for mitochondrial protein translation | 2 | 6.27E−03 |
| GO:0000103 | Sulfate assimilation | 2 | 7.98E−03 |
| GO:0031388 | Organic acid phosphorylation | 1 | 1.55E−02 |
| GO:0019424 | Sulfide oxidation, using siroheme sulfite reductase | 1 | 1.55E−02 |
| GO:0007225 | Patched ligand maturation | 1 | 1.55E−02 |
| GO:0042049 | Cellular acyl-CoA homeostasis | 1 | 1.55E−02 |
| GO:0009704 | De-etiolation | 1 | 1.55E−02 |
| GO:0006427 | Histidyl-tRNA aminoacylation | 1 | 1.55E−02 |
| GO:1900160 | Plastid DNA packaging | 1 | 1.55E−02 |
| Molecular functions | |||
| GO:0004783 | Sulfite reductase (NADPH) activity | 2 | 0.00023 |
| GO:0042286 | Glutamate-1-semialdehyde 2,1-aminomutase activity | 2 | 2.30E−04 |
| GO:0016634 | Oxidoreductase activity, acting on the CH–CH group of donors, oxygen as acceptor | 2 | 2.22E−03 |
| GO:0010181 | FMN binding | 2 | 3.30E−03 |
| GO:0004500 | Dopamine beta-monooxygenase activity | 2 | 1.15E−02 |
| GO:0050311 | Sulfite reductase (ferredoxin) activity | 1 | 1.52E−02 |
| GO:0004853 | Uroporphyrinogen decarboxylase activity | 1 | 1.52E−02 |
| GO:0015390 | Purine-specific nucleoside:sodium symporter activity | 1 | 1.52E−02 |
| GO:0050561 | Glutamate-tRNA(Gln) ligase activity | 1 | 1.52E−02 |
| GO:0004631 | Phosphomevalonate kinase activity | 1 | 1.52E−02 |
| GO:0004821 | Histidine-tRNA ligase activity | 1 | 1.52E−02 |
| GO:0030248 | Cellulose binding | 1 | 1.52E−02 |
| GO:0004160 | Dihydroxy-acid dehydratase activity | 1 | 1.52E−02 |
| GO:0015389 | Pyrimidine- and adenine-specific:sodium symporter activity | 1 | 1.52E−02 |
| GO:0016162 | Cellulose 1,4-beta-cellobiosidase activity | 1 | 1.52E−02 |
| GO:0047012 | Sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity | 1 | 1.52E−02 |
| GO:0008685 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity | 1 | 1.52E−02 |
| GO:0016002 | Sulfite reductase activity | 1 | 1.52E−02 |
| GO:0009976 | Tocopherol cyclase activity | 1 | 1.52E−02 |
| GO:0003864 | 3-Methyl-2-oxobutanoate hydroxymethyltransferase activity | 1 | 1.52E−02 |
| GO:0003854 | 3-Beta-hydroxy-delta5-steroid dehydrogenase activity | 1 | 1.52E−02 |
| GO:0000252 | C-3 sterol dehydrogenase (C-4 sterol decarboxylase) activity | 1 | 1.52E−02 |
| GO:0050421 | Nitrite reductase (NO-forming) activity | 1 | 1.52E−02 |
| Cellular component | |||
| GO:0044434 | Chloroplast part | 55 | 6.60E−29 |
| GO:0009337 | Sulfite reductase complex (NADPH) | 2 | 2.70E−04 |
| GO:0048046 | Apoplast | 7 | 2.80E−04 |
| GO:0020011 | Apicoplast | 8 | 9.30E−04 |
| GO:0009509 | Chromoplast | 2 | 3.89E−03 |