Table 1.
Template sequences used in this study
| Sequence name | Nucleotide substitution(s) in the reverse primer region | GenBank accession no. | Genotype | Bases included in transcript (base number) |
|---|---|---|---|---|
| Quantification standard | None | NC001489 | I.B | 50-341 |
| A | R: C19U | EU011791 | III.A | 24-272 |
| B | R: U17C, C15U | AB839697 | I.A | 65-321 |
| C | R: C19U, U18C | FJ360734 | III.A | 57-305 |
| D | R: C19U, T18A, C15T | AB279734 | III.A | 30-321 |
R: reverse primer region, base 19 represents the position where the 3′-end of the primer binds. For instance, C19U means that a C is substituted to a U in the template at the position where the 19th base of the reverse primer binds