KEY RESOURCES TABLE
| REAGENT or RESOURCE | SOURCE | IDENTIFIER |
|---|---|---|
| Critical Commercial Assays | ||
| E.Z.N.A stool DNA kit | Omega Biotek | Cat#: D4015-02 |
| AccuPrimeTaq DNA Polymerase, high fidelity kit | Thermo Fisher Scientific | Cat#12346086 |
| High-sensitivity DNA analysis kit | Agilent | Cat#5067-4626 |
| KAPA Library Quantification Kit for Illumina platforms | KAPA Biosystems | Cat# KK4873 |
| SequalPrep Normalization Plate Kit, 96-well | Thermo Fisher Scientific | Cat#A1051001 |
| 500 cycle MiSeq V2 Reagent kit | Illumina | Cat#MS-102-2003 |
| Deposited Data | ||
| Raw and analyzed data | This paper; Table S1 | PRJNA531699 |
| Experimental Models: Organisms/Strains | ||
| Mouse: C57BL/6J | The Jackson Laboratory | Stock No: JAX: 000664 |
| Mouse: C57BL/6NTac | Taconic Biosciences | Model: Black 6 (B6NTac), B6 |
| Oligonucleotides | ||
| 16S rRNA gene Illumina sequencing primers | Kozich et al., 2013 | PubMed 23793624 |
| Software and Algorithms | ||
| GraphPad Prism version 7 | GraphPad software | https://www.graphpad.com/ |
| Microsoft Excel | Microsoft | https://products.office.com/en-us/excel |
| Mothur v.1.40.5 | Schloss et al., 2009 | https://www.mothur.org/ |
| SILVA 16S rRNA database | Pruesse et al., 2007 | https://mothur.org/wiki/Silva_reference_files |
| UCHIME | Edgar et al., 2011 | http://drive5.com/usearch/manual/uchime_algo.html |
| 16S rRNA gene training set version 9 of Ribosomal Database Project | Wang et al., 2007 | https://mothur.org/wiki/RDP_reference_files |
| MeV | Saeed et al., 2006 | http://mev.tm4.org |
| Past 3 | Hammer et al., 2001 | https://folk.uio.no/ohammer/past/ |
| TreeGraph 2 | Stöver and Müller, 2010 | http://treegraph.bioinfweb.info/ |
| GENE-E | N/A | https://www.broadinstitute.org/cancer/software/GENE-E/ |
| Other | ||
| PicoLab Laboratory Rodent Diet Irradiated 5L0D | LabDiet | Cat#: 0067138 |
| Illumina MiSeq platform | Illumina | Illumina |