Table 2.
Summary of candidate genes associated with P. salmonis resistance for CS, RT, and AS ranked by score, which is simply based on the number of appearance of each gene across the following categories: i) species (CS, RT, and AS), ii) trait definitions (DD and BS), and iii) groups (A–D).
| Gene symbol | Protein description | Species | Trait | Group | Scorea |
|---|---|---|---|---|---|
| NRTPK | nr-TPK (cytosolic) | CS, RT, and AS | DD and BS | B–D | 8 |
| DDX | ATP-dependent RNA helicase DDX | CS and RT | DD | A–C | 6 |
| ARL5B | ADP-ribosylation factor protein 5B | CS | DD and BS | A and D | 5 |
| LFABP | Fatty acid-binding protein, liver | CS and RT | BS | B and C | 5 |
| GIMAP4 | GTPase IMAP family member 4 | RT | DD and BS | A and D | 5 |
| HS3ST3A1 | Heparan sulfate glucosamine 3-O-sulfotransferase 3A1 | AS | DD and BS | A and D | 5 |
| KIF2C | Kinesin protein KIF2C | RT | DD and BS | A and C | 5 |
| MYO3B | Myosin-IIIb | CS | DD and BS | A and C | 5 |
| NLRP12 | NACHT, LRR, and PYD domains-containing protein 12 | AS | DD | A, C, and D | 5 |
| RAB | Ras-related protein Rab | CS and RT | DD | B and C | 5 |
| CACNB2 | Voltage-dependent L-type calcium channel subunit beta-2 | CS | DD and BS | A and D | 5 |
| TDRD9 | ATP-dependent RNA helicase TDRD9 | CS | DD | A and C | 4 |
| FGD | FYVE, RhoGEF, and PH domain-containing protein | RT and AS | DD | B | 4 |
| GIMAP8 | GTPase IMAP family member 8 | RT | DD | A and D | 4 |
| HINT1 | Histidine triad nucleotide-binding protein 1 | AS | DD | C and D | 4 |
| KIF15 | Kinesin protein KIF15 | CS | DD | A and C | 4 |
| NLRC3 | NACHT, LRR, and CARD domains-containing protein 3 | RT | DD | A and D | 4 |
| COL12 | Collectin-12 | CS | BS | D | 3 |
| LYZ2 | Lysozyme C II | AS | DD | C | 3 |
| MRC1 | Macrophage mannose receptor 1 | CS | BS | D | 3 |
| TAPBPR | Tapasin-related protein | RT | DD | D | 3 |
a
The maximum score possible for one particular gene is equal to 9.