Table 2.
All proteins identified in caffeine-exposed EA.hy926 endothelial cells.
| Protein name | Swiss-Prot ID | Gene symbol | MS/MS identification score | % Cov | No. of distinct/total matched peptides | pI | Intensity (x103 arbitrary unit) |
||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| N1 | N2 | N3 | Mean | SEM | |||||||
| 10 kDa heat shock protein, mitochondrial | P61604 | HSPE1 | 44 | 6.9 | 1/2 | 8.9 | 4330 | 3885 | 4178 | 4131 | 131 |
| 14-3-3 protein beta/alpha | P31946 | YWHAB | 142 | 12.2 | 2/5 | 4.8 | 20109 | 24727 | 21213 | 22016 | 1392 |
| 14-3-3 protein epsilon | P62258 | YWHAE | 142 | 13.7 | 2/5 | 4.6 | 5748 | 5258 | 5227 | 5411 | 169 |
| 14-3-3 protein theta | P27348 | YWHAQ | 112 | 8.2 | 2/4 | 4.7 | 29509 | 33111 | 31173 | 31264 | 1041 |
| 14-3-3 protein zeta/delta | P63104 | YWHAZ | 149 | 30.6 | 6/14 | 4.7 | 18925 | 23312 | 15327 | 19188 | 2309 |
| 26S protease regulatory subunit 6B | P43686 | PSMC4 | 32 | 6.9 | 3/3 | 5.1 | 43621 | 52820 | 44514 | 46985 | 2929 |
| 26S protease regulatory subunit 7 | P35998 | PSMC2 | 43 | 9 | 3/4 | 5.7 | 13867 | 19513 | 13205 | 15528 | 2002 |
| 26S proteasome non-ATPase regulatory subunit 12 | O00232 | PSMD12 | 37 | 9.6 | 3/7 | 7.5 | 23918 | 34643 | 33745 | 30769 | 3435 |
| 26S proteasome non-ATPase regulatory subunit 14 | O00487 | PSMD14 | 44 | 21.3 | 2/3 | 6.1 | NA | NA | NA | NA | NA |
| 3-ketoacyl-CoA thiolase, mitochondrial | P42765 | ACAA2 | 24 | 6.5 | 1/1 | 8.3 | NA | NA | NA | NA | NA |
| 40S ribosomal protein S11 | P62280 | RPS11 | 36 | 13.3 | 2/2 | 10.3 | 4709 | 6986 | 5917 | 5871 | 658 |
| 40S ribosomal protein S12 | P25398 | RPS12 | 109 | 28 | 3/6 | 6.8 | 18285 | 10178 | 13333 | 13932 | 2359 |
| 40S ribosomal protein S13 | P62277 | RPS13 | 129 | 18.5 | 3/7 | 10.5 | 655 | 5388 | 5511 | 3851 | 1599 |
| 40S ribosomal protein S14 | P62263 | RPS14 | 129 | 21.2 | 3/5 | 10.1 | 30601 | 36697 | 31621 | 32973 | 1885 |
| 40S ribosomal protein S15 | P62841 | RPS15 | 74 | 21.4 | 2/3 | 10.4 | 7814 | 19633 | 5966 | 11138 | 4281 |
| 40S ribosomal protein S16 | P62249 | RPS16 | 131 | 14.4 | 2/4 | 10.2 | 23146 | 41588 | 25518 | 30084 | 5793 |
| 40S ribosomal protein S18 | P62269 | RPS18 | 67 | 18.4 | 2/3 | 11.0 | 5993 | 6056 | 7327 | 6458 | 435 |
| 40S ribosomal protein S19 | P39019 | RPS19 | 59 | 12.4 | 2/4 | 10.3 | 9850 | 13001 | 10722 | 11191 | 939 |
| 40S ribosomal protein S2 | P15880 | RPS2 | 128 | 17.1 | 3/5 | 10.3 | 24603 | 15691 | 28391 | 22895 | 3764 |
| 40S ribosomal protein S20 | P60866 | RPS20 | 85 | 10.1 | 1/4 | 10.0 | 7278 | 7636 | 8997 | 7971 | 524 |
| 40S ribosomal protein S25 | P62851 | RPS25 | 78 | 8 | 1/3 | 10.1 | 2534 | 3395 | 7205 | 4378 | 1435 |
| 40S ribosomal protein S3 | P23396 | RPS3 | 69 | 10.7 | 3/5 | 9.7 | 4920 | 5693 | 5855 | 5489 | 288 |
| 40S ribosomal protein S30 | P62861 | FAU | 46 | 16.9 | 1/2 | 12.2 | 6266 | 4765 | 8417 | 6483 | 1060 |
| 40S ribosomal protein S3a | P61247 | RPS3A | 47 | 14.8 | 3/5 | 9.8 | 14393 | 12075 | 7992 | 11487 | 1871 |
| 40S ribosomal protein S4, X isoform | P62701 | RPS4X | 49 | 25.1 | 5/7 | 10.2 | 9693 | 8466 | 7339 | 8500 | 680 |
| 40S ribosomal protein S5 | P46782 | RPS5 | 746 | 8.8 | 2/14 | 9.7 | 20193 | 83956 | 64212 | 56120 | 18846 |
| 40S ribosomal protein S6 | P62753 | RPS6 | 54 | 12.9 | 3/4 | 10.9 | 3336 | 7375 | 9951 | 6887 | 1925 |
| 40S ribosomal protein S7 | P62081 | RPS7 | 97 | 23.7 | 4/5 | 10.1 | 6560 | 9532 | 10157 | 8749 | 1110 |
| 40S ribosomal protein S8 | P62241 | RPS8 | 38 | 5.3 | 1/1 | 10.3 | 6473 | 10745 | 5264 | 7494 | 1663 |
| 40S ribosomal protein SA | P08865 | RPSA | 110 | 14.9 | 2/3 | 4.8 | 2129 | 3513 | 5312 | 3651 | 921 |
| 60 kDa heat shock protein, mitochondrial | P10809 | HSPD1 | 1040 | 18.3 | 7/32 | 5.7 | 19242 | 34047 | 64047 | 39112 | 13180 |
| 60S acidic ribosomal protein P0-like | Q8NHW5 | RPLP0P6 | 72 | 18 | 4/6 | 5.4 | NA | NA | NA | NA | NA |
| 60S acidic ribosomal protein P1 | P05386 | RPLP1 | 33 | 14 | 1/1 | 4.3 | 43660 | 60149 | 35480 | 46430 | 7255 |
| 60S acidic ribosomal protein P2 | P05387 | RPLP2 | 55 | 39.1 | 2/5 | 4.4 | 12111 | 19706 | 23420 | 18413 | 3328 |
| 60S ribosomal protein L10 | P27635 | RPL10 | 108 | 12.1 | 2/3 | 10.1 | 6324 | 13597 | 77703 | 32541 | 22678 |
| 60S ribosomal protein L12 | P30050 | RPL12 | 114 | 14.5 | 2/3 | 9.5 | 6275 | 7716 | 6677 | 6889 | 429 |
| 60S ribosomal protein L17 | P18621 | RPL17 | 36 | 14.1 | 3/5 | 10.2 | 8719 | 6548 | 9066 | 8111 | 788 |
| 60S ribosomal protein L18 | Q07020 | RPL18 | 43 | 14.4 | 2/2 | 11.7 | 3933 | 6316 | 8707 | 6319 | 1378 |
| 60S ribosomal protein L19 | P84098 | RPL19 | 70 | 13.3 | 2/2 | 11.5 | 76851 | 24607 | 75253 | 58904 | 17155 |
| 60S ribosomal protein L23 | P62829 | RPL23 | 128 | 14.3 | 1/3 | 10.5 | 5526 | 7317 | 10014 | 7619 | 1304 |
| 60S ribosomal protein L23a | P62750 | RPL23A | 42 | 13.5 | 2/2 | 10.4 | 8990 | 17173 | 14570 | 13578 | 2414 |
| 60S ribosomal protein L27 | P61353 | RPL27 | 39 | 13.2 | 2/3 | 10.6 | 8472 | 3960 | 3332 | 5255 | 1619 |
| 60S ribosomal protein L29 | P47914 | RPL29 | 49 | 9.4 | 1/2 | 11.7 | 7850 | 4868 | 6524 | 6414 | 863 |
| 60S ribosomal protein L30 | P62888 | RPL30 | 93 | 20 | 2/3 | 9.7 | 10204 | 31234 | 11231 | 17556 | 6845 |
| 60S ribosomal protein L36 | Q9Y3U8 | RPL36 | 70 | 19 | 2/2 | 11.6 | 20307 | 26460 | 24430 | 23732 | 1810 |
| 60S ribosomal protein L38 | P63173 | RPL38 | 107 | 35.7 | 2/9 | 10.1 | NA | NA | NA | NA | NA |
| 60S ribosomal protein L4 | P36578 | RPL4 | 35 | 6.3 | 2/3 | 11.1 | 8221 | 6733 | 9680 | 8212 | 851 |
| 60S ribosomal protein L6 | Q02878 | RPL6 | 39 | 6.3 | 2/3 | 10.6 | 19103 | 4896 | 5498 | 9832 | 4639 |
| 60S ribosomal protein L7 | P18124 | RPL7 | 84 | 14.9 | 2/4 | 10.7 | NA | NA | NA | NA | NA |
| 60S ribosomal protein L7a | P62424 | RPL7A | 27 | 14.7 | 3/3 | 10.6 | 2578 | 2984 | 2804 | 2788 | 118 |
| 78 kDa glucose-regulated protein | P11021 | HSPA5 | 824 | 32.3 | 19/39 | 5.1 | NA | NA | NA | NA | NA |
| Acidic leucine-rich nuclear phosphoprotein 32 family member A | P39687 | ANP32A | 102 | 8.4 | 1/4 | 4.0 | NA | NA | NA | NA | NA |
| Actin, aortic smooth muscle | P62736 | ACTA2 | 2034 | 26.8 | 12/198 | 5.2 | NA | NA | NA | NA | NA |
| Activator of 90 kDa heat shock protein ATPase homolog 1 | O95433 | AHSA1 | 27 | 6.5 | 1/3 | 5.4 | NA | NA | NA | NA | NA |
| Adenylyl cyclase-associated protein 1 | Q01518 | CAP1 | 39 | 11.2 | 3/8 | 8.2 | NA | NA | NA | NA | NA |
| ADP/ATP translocase 2 | P05141 | SLC25A5 | 68 | 15.8 | 5/16 | 9.7 | 40781 | 41979 | 38952 | 40571 | 880 |
| ADP-ribosylation factor 1 | P84077 | ARF1 | 34 | 16 | 2/3 | 6.3 | NA | NA | NA | NA | NA |
| Alpha-actinin-1 | P12814 | ACTN1 | 219 | 9.4 | 6/9 | 5.3 | NA | NA | NA | NA | NA |
| Alpha-actinin-4 | O43707 | ACTN4 | 345 | 17.2 | 12/15 | 5.3 | 259893 | 117977 | 96297 | 158056 | 51302 |
| Alpha-enolase | P06733 | ENO1 | 1797 | 46.5 | 14/215 | 7.0 | 160580 | 195706 | 188976 | 181754 | 10764 |
| Ankyrin repeat domain-containing protein SOWAHA | Q2M3V2 | SOWAHA | 30 | 4.4 | 2/97 | 10.2 | 83308 | 87565 | 65250 | 78708 | 6840 |
| Annexin A1 | P04083 | ANXA1 | 887 | 39 | 10/28 | 6.6 | 90580 | 130768 | 121496 | 114281 | 12149 |
| Annexin A2 | P07355 | ANXA2 | 2306 | 51.9 | 16/190 | 7.6 | NA | NA | NA | NA | NA |
| Annexin A5 | P08758 | ANXA5 | 1474 | 35.9 | 11/44 | 4.9 | 248633 | 339406 | 258133 | 282057 | 28805 |
| ATP synthase subunit alpha, mitochondrial | P25705 | ATP5F1A | 296 | 6.7 | 2/7 | 9.2 | 85448 | 65941 | 111158 | 87515 | 13094 |
| ATP synthase subunit beta, mitochondrial | P06576 | ATP5F1B | 540 | 27 | 10/39 | 5.3 | 26094 | 26613 | 22905 | 25204 | 1159 |
| ATP-dependent RNA helicase DDX1 | Q92499 | DDX1 | 99 | 5.9 | 2/4 | 6.8 | NA | NA | NA | NA | NA |
| ATP-dependent RNA helicase DDX3X | O00571 | DDX3X | 100 | 4.8 | 2/4 | 6.7 | NA | NA | NA | NA | NA |
| Barrier-to-autointegration factor | O75531 | BANF1 | 54 | 27 | 1/2 | 5.8 | NA | NA | NA | NA | NA |
| Basic leucine zipper and W2 domain-containing protein 1 | Q7L1Q6 | BZW1 | 164 | 7.4 | 2/5 | 5.8 | NA | NA | NA | NA | NA |
| Beta-actin-like protein 2 | Q562R1 | ACTBL2 | 1403 | 17.8 | 7/275 | 5.4 | 271784 | 100047 | 361485 | 244439 | 76699 |
| Calnexin | P27824 | CANX | 103 | 2.5 | 1/4 | 4.5 | NA | NA | NA | NA | NA |
| Calpain small subunit 1 | P04632 | CAPNS1 | 46 | 9 | 1/2 | 5.1 | NA | NA | NA | NA | NA |
| Calpain-2 catalytic subunit | P17655 | CAPN2 | 30 | 2.1 | 1/1 | 4.9 | 7615 | 12113 | 9347 | 9692 | 1310 |
| Calreticulin | P27797 | CALR | 43 | 12 | 3/5 | 4.3 | 4362 | 4714 | 4586 | 4554 | 103 |
| Casein kinase II subunit alpha | P68400 | CSNK2A1 | 33 | 4.6 | 1/2 | 7.3 | NA | NA | NA | NA | NA |
| Cathepsin D | P07339 | CTSD | 156 | 8.5 | 2/6 | 6.1 | 19350 | 26988 | 15663 | 20667 | 3335 |
| Caveolin-1 | Q03135 | CAV1 | 114 | 25.3 | 3/5 | 5.7 | 16891 | 9077 | 14234 | 13401 | 2294 |
| CD59 glycoprotein | P13987 | CD59 | 45 | 9.4 | 1/3 | 6.0 | 6779 | 15002 | 11515 | 11099 | 2383 |
| Cell division control protein 42 homolog | P60953 | CDC42 | 168 | 19.9 | 3/10 | 6.2 | 22862 | 38185 | 24789 | 28612 | 4819 |
| Centriolin | Q7Z7A1 | CNTRL | 29 | 4.1 | 8/14 | 5.4 | NA | NA | NA | NA | NA |
| Chloride intracellular channel protein 1 | O00299 | CLIC1 | 126 | 14.5 | 2/4 | 5.1 | 35230 | 32390 | 31734 | 33118 | 1073 |
| Clathrin heavy chain 1 | Q00610 | CLTC | 111 | 4.7 | 5/8 | 5.5 | NA | NA | NA | NA | NA |
| Cleavage and polyadenylation specificity factor subunit 6 | Q16630 | CPSF6 | 73 | 8.7 | 3/3 | 6.7 | NA | NA | NA | NA | NA |
| Coatomer subunit gamma-1 | Q9Y678 | COPG1 | 40 | 2.5 | 2/2 | 5.3 | NA | NA | NA | NA | NA |
| Cofilin-1 | P23528 | RPS3 | 89 | 15.1 | 2/3 | 8.2 | 17057 | 11077 | 11607 | 13247 | 1911 |
| Complement component C8 alpha chain | P07357 | C8A | 41 | 2.9 | 1/2 | 6.1 | 8969 | 14398 | 11483 | 11617 | 1569 |
| Copine-1 | Q99829 | CPNE1 | 112 | 10.2 | 4/26 | 5.5 | 5980 | 6341 | 15281 | 9201 | 3042 |
| Core histone macro-H2A.1 | O75367 | H2AFY | 28 | 8.1 | 2/2 | 9.8 | NA | NA | NA | NA | NA |
| Cytoskeleton-associated protein 4 | Q07065 | CKAP4 | 297 | 20.1 | 8/14 | 5.6 | 38642 | 64756 | 67614 | 57004 | 9218 |
| Dehydrogenase/reductase SDR family member 12 | A0PJE2 | DHRS12 | 37 | 2.5 | 1/1 | 6.8 | NA | NA | NA | NA | NA |
| Dihydropyrimidinase-related protein 1 | Q14194 | CRMP1 | 36 | 10.5 | 4/5 | 6.6 | 36379 | 2686 | 34659 | 24575 | 10956 |
| DNA damage-binding protein 1 | Q16531 | DDB1 | 103 | 4.6 | 3/5 | 5.1 | NA | NA | NA | NA | NA |
| DNA replication licensing factor MCM3 | P25205 | MCM3 | 46 | 8.9 | 5/8 | 5.5 | NA | NA | NA | NA | NA |
| DNA replication licensing factor MCM4 | P33991 | MCM4 | 30 | 5.2 | 3/5 | 6.3 | NA | NA | NA | NA | NA |
| DNA-(apurinic or apyrimidinic site) lyase | P27695 | APEX1 | 39 | 17.6 | 3/4 | 8.3 | 2478 | 5382 | 6307 | 4722 | 1153 |
| DNA-dependent protein kinase catalytic subunit | P78527 | PRKDC | 30 | 3.4 | 11/25 | 6.8 | NA | NA | NA | NA | NA |
| Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 | P04843 | RPN1 | 43 | 4.4 | 2/3 | 6.0 | 39756 | 47552 | 45760 | 44356 | 2357 |
| Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 | P04844 | RPN2 | 37 | 1.9 | 1/1 | 5.4 | 3259 | 1785 | 4937 | 3327 | 910 |
| E3 ubiquitin/ISG15 ligase TRIM25 | Q14258 | TRIM25 | 33 | 2.9 | 1/1 | 8.4 | NA | NA | NA | NA | NA |
| EH domain-containing protein 1 | Q9H4M9 | EHD1 | 28 | 4.3 | 1/1 | 6.4 | 2850 | 2771 | 2456 | 2693 | 120 |
| Elongation factor 1-alpha 1 | P68104 | EEF1A1 | 1816 | 27.1 | 7/200 | 9.1 | 81440 | 79986 | 83219 | 81548 | 935 |
| Elongation factor 1-delta | P29692 | EEF1D | 60 | 6.8 | 2/3 | 4.9 | 4253 | 3855 | 3494 | 3868 | 219 |
| Elongation factor 1-gamma | P26641 | EEF1G | 36 | 11.9 | 4/8 | 6.3 | 20221 | 9537 | 15958 | 15239 | 3105 |
| Elongation factor 2 | P13639 | EEF2 | 766 | 26.3 | 14/41 | 6.4 | 154712 | 236101 | 219802 | 203538 | 24862 |
| Elongation factor Tu, mitochondrial | P49411 | TUFM | 144 | 19 | 5/7 | 7.3 | 22502 | 131221 | 92707 | 82144 | 31826 |
| Endoplasmin | P14625 | HSP90B1 | 330 | 10.2 | 7/19 | 4.8 | NA | NA | NA | NA | NA |
| Enoyl-CoA hydratase, mitochondrial | P30084 | ECHS1 | 114 | 5.9 | 1/5 | 8.3 | 3923 | 4257 | 6914 | 5032 | 946 |
| Eukaryotic initiation factor 4A-I | P60842 | EIF4A1 | 194 | 17.7 | 5/9 | 5.3 | 4303 | 13016 | 11882 | 9734 | 2735 |
| Eukaryotic translation initiation factor 3 subunit E | P60228 | EIF3E | 39 | 4.3 | 1/1 | 5.7 | NA | NA | NA | NA | NA |
| Eukaryotic translation initiation factor 3 subunit F | O00303 | EIF3F | 89 | 5.3 | 1/5 | 5.2 | 5340 | 3388 | 6309 | 5012 | 859 |
| Eukaryotic translation initiation factor 4B | P23588 | EIF4B | 43 | 2.8 | 1/2 | 5.6 | NA | NA | NA | NA | NA |
| Ezrin | P15311 | EZR | 292 | 9.6 | 6/18 | 5.9 | 19984 | 39956 | 39871 | 33270 | 6643 |
| FACT complex subunit SSRP1 | Q08945 | SSRP1 | 29 | 8.9 | 4/5 | 6.5 | NA | NA | NA | NA | NA |
| F-actin-capping protein subunit alpha-1 | P52907 | CAPZA1 | 42 | 6.3 | 1/2 | 5.5 | NA | NA | NA | NA | NA |
| F-actin-capping protein subunit beta | P47756 | CAPZB | 80 | 9 | 1/1 | 5.4 | NA | NA | NA | NA | NA |
| Far upstream element-binding protein 2 | Q92945 | KHSRP | 30 | 1.4 | 1/1 | 6.9 | 2971 | 3055 | 4257 | 3428 | 415 |
| Fascin | Q16658 | FSCN1 | 25 | 4.9 | 1/1 | 6.8 | NA | NA | NA | NA | NA |
| Filamin-A | P21333 | FLNA | 499 | 11.9 | 19/28 | 5.7 | NA | NA | NA | NA | NA |
| Filamin-B | O75369 | FLNB | 92 | 2.1 | 4/6 | 5.5 | 41775 | 44092 | 39521 | 41796 | 1320 |
| Fructose-bisphosphate aldolase A | P04075 | ALDOA | 518 | 34.9 | 9/24 | 8.3 | 34570 | 39782 | 36191 | 36848 | 1540 |
| Galectin-1 | P09382 | LGALS1 | 380 | 42.2 | 5/16 | 5.3 | 51517 | 52333 | 58343 | 54064 | 2152 |
| Gamma-interferon-inducible protein 16 | Q16666 | IFI16 | 33 | 7.4 | 4/5 | 9.3 | NA | NA | NA | NA | NA |
| Glucose-6-phosphate isomerase | P06744 | GPI | 77 | 10.2 | 3/5 | 8.4 | 45245 | 67097 | 59458 | 57267 | 6403 |
| Glucosidase 2 subunit beta | P14314 | PRKCSH | 58 | 7.8 | 4/5 | 4.3 | 16495 | 19203 | 14906 | 16868 | 1254 |
| Glutamate dehydrogenase 1, mitochondrial | P00367 | GLUD1 | 74 | 8.2 | 3/5 | 7.7 | NA | NA | NA | NA | NA |
| Glutathione S-transferase P | P09211 | GSTP1 | 303 | 41.9 | 4/8 | 5.4 | 10233 | 11386 | 11396 | 11005 | 386 |
| Glyceraldehyde-3-phosphate dehydrogenase | P04406 | GAPDH | 6709 | 54.9 | 16/338 | 8.6 | 502087 | 483920 | 504326 | 496778 | 6461 |
| Glycerol kinase 2 | Q14410 | GK2 | 40 | 1.6 | 1/5 | 5.6 | NA | NA | NA | NA | NA |
| GTP-binding nuclear protein Ran | P62826 | RAN | 82 | 15.7 | 3/5 | 7.0 | 49761 | 47473 | 54665 | 50633 | 2121 |
| HEAT repeat-containing protein 5A | Q86XA9 | HEATR5A | 26 | 1.1 | 2/134 | 6.1 | 83125 | 92266 | 68546 | 81312 | 6907 |
| Heat shock 70 kDa protein 1A | P0DMV8 | HSPA1A | 224 | 10.3 | 5/9 | 5.5 | 66770 | 61785 | 54021 | 60859 | 3709 |
| Heat shock 70 kDa protein 6 | P17066 | HSPA6 | 308 | 9.5 | 6/12 | 5.8 | 64974 | 60904 | 59196 | 61691 | 1714 |
| Heat shock cognate 71 kDa protein | P11142 | HSPA8 | 908 | 31.6 | 18/37 | 5.4 | NA | NA | NA | NA | NA |
| Heat shock protein beta-1 | P04792 | HSPB1 | 241 | 37.6 | 6/12 | 6.0 | 43768 | 32291 | 27387 | 34482 | 4854 |
| Heat shock protein HSP 90-alpha | P07900 | HSP90AA1 | 722 | 28.1 | 15/40 | 4.9 | 243625 | 290440 | 265009 | 266358 | 13531 |
| Heat shock protein HSP 90-beta | P08238 | HSP90AB1 | 774 | 31.4 | 17/38 | 5.0 | 183622 | 213245 | 204446 | 200438 | 8783 |
| Heterogeneous nuclear ribonucleoprotein D0 | Q14103 | HNRNPD | 66 | 14.4 | 4/6 | 7.6 | 3453 | 6167 | 6846 | 5489 | 1037 |
| Heterogeneous nuclear ribonucleoprotein H | P31943 | HNRNPH1 | 254 | 12.5 | 4/9 | 5.9 | 13440 | 18911 | 24674 | 19008 | 3243 |
| Heterogeneous nuclear ribonucleoprotein H3 | P31942 | HNRNPH3 | 99 | 4.9 | 1/3 | 6.4 | 4010 | 3124 | 4367 | 3834 | 370 |
| Heterogeneous nuclear ribonucleoprotein K | P61978 | HNRNPK | 138 | 11.2 | 4/7 | 5.4 | 18919 | 15369 | 21312 | 18534 | 1726 |
| Heterogeneous nuclear ribonucleoprotein L | P14866 | HNRNPL | 34 | 3.1 | 1/1 | 8.5 | NA | NA | NA | NA | NA |
| Heterogeneous nuclear ribonucleoprotein M | P52272 | HNRNPM | 58 | 14.8 | 7/9 | 8.8 | 4171 | 19389 | 10860 | 11473 | 4404 |
| Heterogeneous nuclear ribonucleoprotein Q | O60506 | SYNCRIP | 64 | 7.1 | 3/6 | 8.7 | 43372 | 33645 | 26888 | 34635 | 4784 |
| Heterogeneous nuclear ribonucleoprotein R | O43390 | HNRNPR | 91 | 4.1 | 2/3 | 8.2 | 5230 | 7021 | 12551 | 8268 | 2203 |
| Heterogeneous nuclear ribonucleoprotein U | Q00839 | HNRNPU | 81 | 9.8 | 6/9 | 5.8 | 7785 | 7811 | 8959 | 8185 | 387 |
| Heterogeneous nuclear ribonucleoproteins A2/B1 | P22626 | HNRNPA2B1 | 264 | 14.7 | 4/8 | 9.0 | 9234 | 7503 | 13746 | 10161 | 1861 |
| Heterogeneous nuclear ribonucleoproteins C1/C2 | P07910 | HNRNPC | 74 | 5.9 | 2/3 | 5.0 | NA | NA | NA | NA | NA |
| High mobility group protein HMGI-C | P52926 | HMGA2 | 145 | 33 | 3/9 | 10.6 | 6710 | 7154 | 5082 | 6315 | 630 |
| Histone H1.4 | P10412 | HIST1H1E | 187 | 21.5 | 4/9 | 11.0 | 29860 | 87832 | 90815 | 69502 | 19840 |
| Histone H1.5 | P16401 | HIST1H1B | 38 | 10.6 | 2/2 | 10.9 | 13058 | 22109 | 11606 | 15591 | 3286 |
| Histone H2A type 1-B/E | P04908 | HIST1H2AB | 1824 | 28.5 | 3/214 | 11.1 | 251738 | 258348 | 301719 | 270602 | 15675 |
| Histone H2A type 1-D | P20671 | HIST1H2AD | 1914 | 28.5 | 3/216 | 10.9 | NA | NA | NA | NA | NA |
| Histone H2B type 1-B | P33778 | HIST1H2BB | 7978 | 34.9 | 4/395 | 10.3 | NA | NA | NA | NA | NA |
| Histone H2B type 1-C/E/F/G/I | P62807 | HIST1H2BC | 7971 | 35.7 | 5/400 | 10.3 | NA | NA | NA | NA | NA |
| Histone H2B type 1-M | Q99879 | HIST1H2BM | 2783 | 52.4 | 8/95 | 10.3 | NA | NA | NA | NA | NA |
| Histone H3.1t | Q16695 | HIST3H3 | 218 | 19.1 | 3/16 | 11.1 | NA | NA | NA | NA | NA |
| Histone H4 | P62805 | HIST1H4A | 1780 | 51.5 | 7/88 | 11.4 | 350255 | 303112 | 359011 | 337459 | 17359 |
| Hsc70-interacting protein | P50502 | ST13 | 30 | 5.1 | 2/2 | 5.2 | 3011 | 2942 | 1149 | 2367 | 609 |
| Importin subunit beta-1 | Q14974 | KPNB1 | 30 | 3.4 | 2/3 | 4.7 | 32953 | 41673 | 1683 | 25436 | 12140 |
| Importin-9 | Q96P70 | IPO9 | 68 | 3.5 | 2/6 | 4.7 | NA | NA | NA | NA | NA |
| Integrin beta-4 | P16144 | ITGB4 | 44 | 3.7 | 6/8 | 5.7 | 4247 | 13505 | 11076 | 9609 | 2771 |
| Interleukin enhancer-binding factor 2 | Q12905 | ILF2 | 27 | 8.7 | 2/3 | 5.2 | 1288 | 7257 | 7991 | 5512 | 2123 |
| Interleukin enhancer-binding factor 3 | Q12906 | ILF3 | 64 | 7.3 | 5/5 | 8.9 | 2673 | 3160 | 3173 | 3002 | 164 |
| Kelch-like protein 35 | Q6PF15 | KLHL35 | 76 | 3.9 | 2/54 | 8.1 | 90822 | 94586 | 123950 | 103119 | 10472 |
| Keratin, type II cytoskeletal 7 | P08729 | KRT7 | 456 | 20.3 | 9/25 | 5.4 | 110541 | 140404 | 132067 | 127671 | 8896 |
| Keratin, type II cytoskeletal 8 | P05787 | KRT8 | 643 | 33.1 | 16/34 | 5.5 | 168002 | 180131 | 185018 | 177717 | 5058 |
| l-lactate dehydrogenase A chain | P00338 | LDHA | 384 | 25.9 | 8/20 | 8.4 | 113122 | 114854 | 122830 | 116936 | 2989 |
| l-lactate dehydrogenase B chain | P07195 | LDHB | 793 | 35.3 | 9/22 | 5.7 | 151327 | 164173 | 149031 | 154844 | 4712 |
| Lysine-specific demethylase 2B | Q8NHM5 | KDM2B | 31 | 5.2 | 5/6 | 8.9 | NA | NA | NA | NA | NA |
| Moesin | P26038 | MSN | 765 | 31.2 | 17/46 | 6.1 | 75143 | 104685 | 121996 | 100608 | 13678 |
| Myosin light polypeptide 6 | P60660 | MYL6 | 145 | 19.2 | 2/5 | 4.6 | NA | NA | NA | NA | NA |
| Myosin-9 | P35579 | MYH9 | 606 | 15.1 | 23/44 | 5.5 | 136722 | 154816 | 75160 | 122233 | 24109 |
| Myristoylated alanine-rich C-kinase substrate | P29966 | MARCKS | 100 | 11.4 | 2/3 | 4.5 | NA | NA | NA | NA | NA |
| Nascent polypeptide-associated complex subunit alpha, muscle-specific form | E9PAV3 | NACA | 64 | 2.5 | 3/3 | 9.6 | 4236 | 6604 | 4831 | 5224 | 711 |
| Neurobeachin-like protein 2 | Q6ZNJ1 | NBEAL2 | 26 | 0.9 | 3/5 | 6.0 | NA | NA | NA | NA | NA |
| Neuroblast differentiation-associated protein AHNAK | Q09666 | AHNAK | 106 | 3.9 | 14/28 | 5.8 | 31540 | 28337 | 24712 | 28197 | 1972 |
| Nuclear autoantigenic sperm protein | P49321 | NASP | 74 | 2.9 | 1/2 | 4.3 | NA | NA | NA | NA | NA |
| Nucleolin | P19338 | NCL | 340 | 12.4 | 5/14 | 4.6 | 18999 | 29968 | 26172 | 25046 | 3216 |
| Nucleophosmin | P06748 | NPM1 | 560 | 25.5 | 6/22 | 4.6 | 70290 | 87003 | 71940 | 76411 | 5317 |
| Nucleoside diphosphate kinase A | P15531 | NME1 | 256 | 28.9 | 3/9 | 5.8 | NA | NA | NA | NA | NA |
| Nucleoside diphosphate kinase B | P22392 | NME2 | 110 | 23.7 | 2/5 | 8.5 | NA | NA | NA | NA | NA |
| Nucleosome assembly protein 1-like 1 | P55209 | NAP1L1 | 244 | 11.8 | 3/9 | 4.4 | 14361 | 22476 | 19359 | 18732 | 2363 |
| Obg-like ATPase 1 | Q9NTK5 | OLA1 | 65 | 7.6 | 2/3 | 7.6 | 11814 | 7151 | 3737 | 7567 | 2341 |
| Parathymosin | P20962 | PTMS | 42 | 11.8 | 1/1 | 4.1 | NA | NA | NA | NA | NA |
| Peptidyl-prolyl cis-trans isomerase A | P62937 | PPIA | 855 | 58.2 | 8/44 | 7.7 | 231705 | 300387 | 236591 | 256227 | 22125 |
| Peptidyl-prolyl cis-trans isomerase B | P23284 | PPIB | 175 | 28.2 | 5/8 | 9.4 | 12703 | 18919 | 14342 | 15322 | 1860 |
| Peroxiredoxin-1 | Q06830 | PRDX1 | 206 | 48.7 | 8/15 | 8.3 | 27647 | 30113 | 35543 | 31101 | 2332 |
| Peroxiredoxin-6 | P30041 | PRDX6 | 54 | 22.3 | 3/6 | 6.0 | 1613 | 1696 | 2904 | 2071 | 417 |
| Phenylalanine--tRNA ligase alpha subunit | Q9Y285 | FARSA | 31 | 7.5 | 3/4 | 7.3 | 11640 | 18021 | 14123 | 14595 | 1857 |
| Phosphoglycerate kinase 1 | P00558 | PGK1 | 468 | 30.9 | 9/19 | 8.3 | 35780 | 29231 | 26549 | 30520 | 2741 |
| Phosphoglycerate mutase 1 | P18669 | PGAM1 | 154 | 22 | 3/7 | 6.7 | NA | NA | NA | NA | NA |
| Plasminogen activator inhibitor 2 | P05120 | SERPINB2 | 40 | 6.7 | 2/3 | 5.5 | 10671 | 46264 | 15720 | 24218 | 11119 |
| Plectin | Q15149 | PLEC | 629 | 10.1 | 40/76 | 5.7 | 129537 | 94526 | 112414 | 112159 | 10108 |
| Poly(rC)-binding protein 2 | Q15366 | PCBP2 | 143 | 10.4 | 3/5 | 6.3 | NA | NA | NA | NA | NA |
| Polymerase I and transcript release factor | Q6NZI2 | CAVIN1 | 203 | 7.7 | 2/4 | 5.5 | 18569 | 26062 | 26052 | 23561 | 2496 |
| Polypyrimidine tract-binding protein 1 | P26599 | PTBP1 | 77 | 8.1 | 2/3 | 9.2 | NA | NA | NA | NA | NA |
| PRA1 family protein 3 | O75915 | ARL6IP5 | 75 | 10.1 | 1/2 | 9.8 | NA | NA | NA | NA | NA |
| Prelamin-A/C | P02545 | LMNA | 801 | 30.4 | 18/42 | 6.6 | 178301 | 195963 | 179349 | 184538 | 5721 |
| Probable ATP-dependent RNA helicase DDX17 | Q92841 | DDX17 | 70 | 7.8 | 6/11 | 8.5 | 10037 | 3635 | 7211 | 6961 | 1852 |
| Probable ATP-dependent RNA helicase DDX5 | P17844 | DDX5 | 160 | 9.1 | 4/6 | 9.1 | 60887 | 75245 | 68979 | 68370 | 4156 |
| Profilin-1 | P07737 | PFN1 | 173 | 29.3 | 4/11 | 8.4 | 25682 | 31776 | 35538 | 30999 | 2871 |
| Prohibitin | P35232 | PHB | 60 | 3.7 | 1/3 | 5.6 | 3563 | 3755 | 3652 | 3657 | 56 |
| Prohibitin-2 | Q99623 | PHB2 | 84 | 6 | 2/3 | 9.8 | 3060 | 11607 | 4513 | 6393 | 2640 |
| Proliferating cell nuclear antigen | P12004 | PCNA | 89 | 18.8 | 3/5 | 4.6 | 10521 | 15864 | 15787 | 14057 | 1768 |
| Proliferation-associated protein 2G4 | Q9UQ80 | PA2G4 | 60 | 13.5 | 4/5 | 6.1 | 15606 | 4851 | 5579 | 8679 | 3470 |
| Proteasome activator complex subunit 2 | Q9UL46 | PSME2 | 84 | 5.4 | 1/3 | 5.5 | 1510 | 6784 | 13337 | 7211 | 3421 |
| Protein disulfide-isomerase A3 | P30101 | PDIA3 | 198 | 13.5 | 5/9 | 6.0 | 14479 | 24142 | 14370 | 17664 | 3239 |
| Protein disulfide-isomerase A4 | P13667 | PDIA4 | 60 | 1.9 | 1/2 | 5.0 | 1248 | 3013 | 3897 | 2719 | 779 |
| Protein disulfide-isomerase A6 | Q15084 | PDIA6 | 103 | 16.4 | 4/7 | 5.0 | 15804 | 36195 | 31234 | 27744 | 6139 |
| Protein MCM10 homolog | Q7L590 | MCM10 | 20 | 2.6 | 2/16 | 9.0 | NA | NA | NA | NA | NA |
| Protein S100-A10 | P60903 | S100A10 | 152 | 35.1 | 2/6 | 6.8 | 5636 | 5348 | 5490 | 5491 | 83 |
| Protein S100-A11 | P31949 | S100A11 | 973 | 34.3 | 3/43 | 6.6 | 26304 | 94980 | 30001 | 50428 | 22301 |
| Protein S100-A6 | P06703 | S100A6 | 63 | 8.9 | 1/2 | 5.3 | 7360 | 7574 | 5655 | 6863 | 607 |
| Protein-glutamine gamma-glutamyltransferase 2 | P21980 | TGM2 | 320 | 16.4 | 8/13 | 5.1 | 34271 | 36100 | 28001 | 32791 | 2452 |
| Prothymosin alpha | P06454 | PTMA | 87 | 12.6 | 2/2 | 3.7 | 1708 | 2465 | 1973 | 2049 | 222 |
| Proto-oncogene serine/threonine-protein kinase mos | P00540 | MOS | 51 | 2.6 | 1/15 | 9.2 | 118112 | 86458 | 107713 | 104095 | 9315 |
| Purine nucleoside phosphorylase | P00491 | PNP | 47 | 12.1 | 2/4 | 6.5 | 4157 | 6685 | 5275 | 5372 | 731 |
| Putative Ras-related protein Rab-1C | Q92928 | RAB1C | 39 | 28.9 | 3/4 | 5.3 | 1518 | 2153 | 1326 | 1666 | 250 |
| Pyruvate dehydrogenase E1 component subunit beta, mitochondrial | P11177 | PDHB | 55 | 8.9 | 2/3 | 6.2 | 31990 | 32117 | 37655 | 33921 | 1868 |
| Pyruvate kinase PKM | P14618 | PKM | 2280 | 55.9 | 23/173 | 8.0 | 397067 | 567868 | 467824 | 477586 | 49547 |
| Rab GDP dissociation inhibitor beta | P50395 | GDI2 | 139 | 5.6 | 3/8 | 6.1 | 4013 | 6661 | 13713 | 8129 | 2895 |
| Ras GTPase-activating-like protein IQGAP1 | P46940 | IQGAP1 | 56 | 3.7 | 4/7 | 6.1 | 8004 | 6786 | 7340 | 7376 | 352 |
| Receptor of activated protein C kinase 1 | P63244 | RACK1 | 42 | 15.5 | 4/5 | 7.6 | 1002 | 3333 | 1849 | 2061 | 681 |
| Rho GDP-dissociation inhibitor 1 | P52565 | ARHGDIA | 100 | 7.4 | 1/2 | 5.0 | 4867 | 3912 | 1651 | 3477 | 954 |
| Rho GDP-dissociation inhibitor 2 | P52566 | ARHGDIB | 48 | 12.9 | 1/1 | 5.1 | NA | NA | NA | NA | NA |
| Rho GTPase-activating protein 26 | Q9UNA1 | ARHGAP26 | 25 | 2.9 | 2/17 | 6.2 | NA | NA | NA | NA | NA |
| Ribosome-binding protein 1 | Q9P2E9 | RRBP1 | 40 | 1.9 | 2/3 | 8.7 | NA | NA | NA | NA | NA |
| RNA polymerase II-associated protein 1 | Q9BWH6 | RPAP1 | 32 | 0.7 | 1/3 | 6.0 | 3437 | 6928 | 9264 | 6543 | 1693 |
| RNA-binding protein FUS | P35637 | FUS | 231 | 8.9 | 3/4 | 9.4 | NA | NA | NA | NA | NA |
| Serine/threonine-protein phosphatase PP1-gamma catalytic subunit | P36873 | PPP1CC | 45 | 9.9 | 2/3 | 6.1 | 2873 | 5623 | 3209 | 3902 | 866 |
| Serpin H1 | P50454 | SERPINH1 | 125 | 8.9 | 2/4 | 8.8 | 40068 | 47929 | 46178 | 44725 | 2383 |
| Signal recognition particle 14 kDa protein | P37108 | SRP14 | 100 | 10.3 | 1/1 | 10.1 | NA | NA | NA | NA | NA |
| Small nuclear ribonucleoprotein Sm D1 | P62314 | SNRPD1 | 138 | 16.8 | 1/6 | 11.6 | 6398 | 47268 | 45270 | 32978 | 13303 |
| Splicing factor, proline- and glutamine-rich | P23246 | SFPQ | 94 | 7.5 | 4/10 | 9.5 | 11573 | 10818 | 13601 | 11998 | 831 |
| Stathmin | P16949 | STMN1 | 54 | 15.4 | 2/6 | 5.8 | 47794 | 7520 | 23965 | 26426 | 11691 |
| Stress-70 protein, mitochondrial | P38646 | HSPA9 | 47 | 8.7 | 5/6 | 5.9 | 13151 | 19381 | 11846 | 14792 | 2325 |
| Stress-induced-phosphoprotein 1 | P31948 | STIP1 | 45 | 15.5 | 6/12 | 6.4 | 4714 | 8504 | 9411 | 7543 | 1439 |
| Sulfotransferase 1A3 | P0DMM9 | SULT1A3 | 74 | 11.2 | 2/4 | 5.7 | NA | NA | NA | NA | NA |
| Surfeit locus protein 4 | O15260 | SURF4 | 76 | 6.7 | 1/4 | 7.6 | NA | NA | NA | NA | NA |
| T-complex protein 1 subunit alpha | P17987 | TCP1 | 45 | 9.9 | 4/6 | 5.8 | 4850 | 10421 | 13921 | 9731 | 2641 |
| T-complex protein 1 subunit delta | P50991 | CCT4 | 149 | 4.8 | 2/3 | 8.0 | 2671 | 2174 | 1872 | 2239 | 233 |
| T-complex protein 1 subunit eta | Q99832 | CCT7 | 234 | 4.6 | 1/9 | 7.6 | NA | NA | NA | NA | NA |
| T-complex protein 1 subunit gamma | P49368 | CCT3 | 41 | 4.8 | 1/1 | 6.1 | NA | NA | NA | NA | NA |
| T-complex protein 1 subunit theta | P50990 | CCT8 | 109 | 7.5 | 3/5 | 5.4 | 7786 | 8308 | 9644 | 8579 | 553 |
| T-complex protein 1 subunit zeta | P40227 | CCT6A | 97 | 15.6 | 5/7 | 6.2 | 19661 | 26392 | 26299 | 24117 | 2228 |
| Thioredoxin domain-containing protein 5 | Q8NBS9 | TXNDC5 | 177 | 15 | 5/9 | 5.6 | 5551 | 38511 | 4363 | 16142 | 11190 |
| Transaldolase | P37837 | TALDO1 | 41 | 3.3 | 1/4 | 6.4 | 15741 | 13947 | 8625 | 12771 | 2137 |
| Transcription elongation factor A protein-like 3 | Q969E4 | TCEAL3 | 31 | 24 | 3/5 | 4.9 | NA | NA | NA | NA | NA |
| Transcription factor BTF3 | P20290 | BTF3 | 62 | 10.7 | 1/2 | 9.4 | NA | NA | NA | NA | NA |
| Transgelin-2 | P37802 | TAGLN2 | 732 | 49.7 | 7/28 | 8.4 | 57399 | 110480 | 76795 | 81558 | 15507 |
| Transitional endoplasmic reticulum ATPase | P55072 | VCP | 161 | 6.8 | 4/12 | 5.1 | 6374 | 29473 | 14137 | 16661 | 6787 |
| Transketolase | P29401 | TKT | 643 | 11.4 | 6/16 | 7.6 | 24076 | 47350 | 44148 | 38524 | 7283 |
| Triosephosphate isomerase | P60174 | TPI1 | 643 | 35.7 | 7/22 | 5.7 | 146216 | 151248 | 177844 | 158436 | 9812 |
| Tropomyosin alpha-1 chain | P09493 | TPM1 | 132 | 14.1 | 3/8 | 4.7 | NA | NA | NA | NA | NA |
| Tropomyosin alpha-3 chain | P06753 | TPM3 | 167 | 9.5 | 2/6 | 4.7 | 11546 | 13209 | 13043 | 12599 | 529 |
| Tubulin alpha-1A chain | Q71U36 | TUBA1A | 688 | 31.5 | 10/34 | 4.9 | NA | NA | NA | NA | NA |
| Tubulin alpha-1B chain | P68363 | TUBA1B | 708 | 28.4 | 9/34 | 4.9 | 256115 | 272977 | 268453 | 265848 | 5039 |
| Tubulin beta chain | P07437 | TUBB | 887 | 32.7 | 11/35 | 4.8 | 146362 | 176721 | 141763 | 154949 | 10967 |
| Tubulin beta-4A chain | P04350 | TUBB4A | 396 | 32.2 | 9/17 | 4.8 | 121377 | 132544 | 105460 | 119794 | 7859 |
| Tubulin beta-4B chain | P68371 | TUBB4B | 810 | 32.6 | 11/33 | 4.8 | NA | NA | NA | NA | NA |
| Tubulin beta-6 chain | Q9BUF5 | TUBB6 | 189 | 18.8 | 6/12 | 4.8 | 77941 | 88821 | 57231 | 74664 | 9265 |
| Ubiquitin carboxyl-terminal hydrolase isozyme L1 | P09936 | UCHL1 | 80 | 15.2 | 2/4 | 5.3 | 18181 | 17649 | 41400 | 25743 | 7830 |
| Ubiquitin-40S ribosomal protein S27a | P62979 | RPS27A | 377 | 19.9 | 3/10 | 9.7 | NA | NA | NA | NA | NA |
| Ubiquitin-like modifier-activating enzyme 1 | P22314 | UBA1 | 335 | 10.7 | 7/12 | 5.5 | 100384 | 139631 | 136812 | 125609 | 12639 |
| UPF0183 protein C16orf70 | Q9BSU1 | C16orf70 | 31 | 3.6 | 1/6 | 7.6 | 44961 | 24989 | 45433 | 38461 | 6738 |
| UPF0258 protein KIAA1024 | Q9UPX6 | KIAA1024 | 38 | 7.2 | 5/8 | 7.0 | 5248 | 8423 | 6191 | 6621 | 941 |
| Vimentin | P08670 | VIM | 3540 | 55.2 | 28/248 | 5.1 | 912676 | 1042672 | 935577 | 963641 | 40064 |
| Vinculin | P18206 | VCL | 157 | 6.4 | 5/11 | 5.5 | 23215 | 25731 | 31166 | 26704 | 2346 |
| X-ray repair cross-complementing protein 6 | P12956 | XRCC6 | 195 | 16.4 | 6/9 | 6.2 | 7446 | 3195 | 21075 | 10572 | 5393 |
| Zyxin | Q15942 | ZYX | 35 | 2.6 | 1/1 | 6.2 | 4116 | 1800 | 1654 | 2523 | 797 |
%Cov = %Sequence coverage = (number of the matched residues/total number of residues in the entire sequence) x 100%.
NA = not applicable (protein was identified in the sample but its MS/MS spectra did not meet predefined criteria for high-confident intensity analysis).