Table 1.
GRAS gene family identified in Juglans regia.
| Gene name | Gene symbol | Scaff | Scaff rename | Genome location | Strand | Related protein | Protein short name | GRAS domain position |
|---|---|---|---|---|---|---|---|---|
| JrNSP2b | LOC108980261 | NW_017388857.1 | Scaff2 | NW_017388857.1: 818600–821800 | + | XP_018806667.1 | JrNSP2b | 119–499 |
| JrRGL1a | LOC108981380 | NW_017389446.1 | Scaff13 | NW_017389446.1: 52316–54604 | − | XP_018808049.1 | JrRGL1a | 155–526 |
| JrSCL32 | LOC108982343 | NW_017443009.1 | Scaff29 | NW_017443009.1: 2200726–2203181 | + | XP_018809230.1 | JrSCL32 | 51–453 |
| JrSCL28a | LOC108984412 | NW_017442835.1 | Scaff27 | NW_017442835.1: 99273–101699 | + | XP_018811904.1 | JrSCL28a | 303–669 |
| JrSCL1a-b | LOC108984751 | NW_017443020.1 | Scaff30 | NW_017443020.1: 188763–190597 | − | XP_018812342.1 | JrSCL1a | 202–571 |
| XP_018812343.1 | JrSCL1b | 202–571 | ||||||
| JrSCL21a-d | LOC108985037 | NW_017439731.1 | Scaff20 | NW_017439731.1: 8737–10242 | − | XP_018812730.1 | JrSCL21a | 176–546 |
| XP_018812737.1 | JrSCL21b | 176–546 | ||||||
| XP_018812742.1 | JrSCL21c | 176–546 | ||||||
| XP_018812749.1 | JrSCL21d | 176–546 | ||||||
| JrSCL23a | LOC108985505 | NW_017443560.1 | Scaff36 | NW_017443560.1: 1461510–1465205 | + | XP_018813375.1 | JrSCL23a | 73–427 |
| JrSCL14a | LOC108986374 | NW_017389857.1 | Scaff15 | NW_017389857.1: 63443–68155 | + | XP_018814536.1 | JrSCL14a | 369–740 |
| JrGAIc | LOC108986541 | NW_017440525.1 | Scaff21 | NW_017440525.1: 114274–115992 | − | XP_018814727.1 | JrGAIc | 245–603 |
| JrSCLa | LOC108987805 | NW_017443259.1 | Scaff32 | NW_017443259.1: 126697–128229 | − | XP_018816363.1 | JrSCLa | 1–310 |
| JrSCL3a | LOC108988066 | NW_017388959.1 | Scaff7 | NW_017388959.1: 519784–522043 | − | XP_018816712.1 | JrSCL3a | 40–422 |
| JrGAIb | LOC108988158 | NW_017389752.1 | Scaff14 | NW_017389752.1: 468309–470492 | + | XP_018816848.1 | JrGAIb | 238–599 |
| JrNSP2a | LOC108988310 | NW_017442823.1 | Scaff26 | NW_017442823.1: 505495–509211 | + | XP_018817086.1 | JrNSP2a | 117–501 |
| JrSHRa | LOC108988543 | NW_017443543.1 | Scaff34 | NW_017443543.1: 934500–937558 | + | XP_018817374.1 | JrSHRa | 105–484 |
| JrSCL3b | LOC108988679 | NW_017389863.1 | Scaff16 | NW_017389863.1: 241932–244037 | + | XP_018817550.1 | JrSCL3b | 44–457 |
| JrRGL1b | LOC108989561 | NW_017389020.1 | Scaff10 | NW_017389020.1: 713954–717041 | − | XP_018818751.1 | JrRGL1b | 138–508 |
| JrSCL27 | LOC108990734 | NW_017389863.1 | Scaff16 | NW_017389863.1: 270998–273865 | − | XP_018820345.1 | JrSCL27 | 379–740 |
| JrSCL18 | LOC108992395 | NW_017389020.1 | Scaff10 | NW_017389020.1: 724451–727425 | − | XP_018822504.1 | JrSCL18 | 47–445 |
| JrSHRb | LOC108992438 | NW_017389863.1 | Scaff16 | NW_017389863.1: 265516–268446 | − | XP_018822539.1 | JrSHRb | 60–433 |
| JrSCL14b | LOC108992934 | NW_017389020.1 | Scaff10 | NW_017389020.1: 761280–765445 | + | XP_018823200.1 | JrSCL14b | 325–701 |
| JrSCL13a | LOC108993395 | NW_017443546.1 | Scaff35 | NW_017443546.1: 1236377–1240941 | + | XP_018823840.1 | JrSCL13a | 176–546 |
| JrPAT1a-d | LOC108994062 | NW_017443598.1 | Scaff41 | NW_017443598.1: 206015–211096 | − | XP_018824686.1 | JrPAT1a | 168–538 |
| XP_018824687.1 | JrPAT1b | 168–538 | ||||||
| XP_018824688.1 | JrPAT1c | 168–538 | ||||||
| XP_018824689.1 | JrPAT1d | 168–538 | ||||||
| JrSCL3c | LOC108994657 | NW_017443578.1 | Scaff38 | NW_017443578.1: 996644–998749 | + | XP_018825500.1 | JrSCL3c | 46–467 |
| JrSCL4a | LOC108995346 | NW_017388898.1 | Scaff6 | NW_017388898.1: 2412028–2413671 | + | XP_018826448.1 | JrSCL4a | 245–615 |
| JrSCL15 | LOC108995362 | NW_017442540.1 | Scaff24 | NW_017442540.1: 34589–38721 | − | XP_018826470.1 | JrSCL15 | 183–552 |
| JrSCLb-c | LOC108995898 | NW_017388887.1 | Scaff4 | NW_017388887.1: 1355328–1358341 | − | XP_018827109.1 | JrSCLb | 464–816 |
| XP_018827111.1 | JrSCLc | 438–790 | ||||||
| JrSCLd | LOC108995938 | NW_017388969.1 | Scaff8 | NW_017388969.1: 382640–385001 | + | XP_018827159.1 | JrSCLd | 152–507 |
| JrSCL23b | LOC108996381 | NW_017388856.1 | Scaff1 | NW_017388856.1: 1066492–1069818 | − | XP_018827796.1 | JrSCL23b | 73–427 |
| JrSCL13b-d | LOC108996812 | NW_017388861.1 | Scaff3 | NW_017388861.1: 936197–939325 | − | XP_018828372.1 | JrSCL13b | 174–545 |
| XP_018828373.1 | JrSCL13c | 174–545 | ||||||
| XP_018828374.1 | JrSCL13d | 174–545 | ||||||
| JrSCL28b-c | LOC108997020 | NW_017442720.1 | Scaff25 | NW_017442720.1: 50539–52384 | − | XP_018828642.1 | JrSCL28b | 304–670 |
| XP_018828643.1 | JrSCL28c | 304–643 | ||||||
| JrSCL4b | LOC108997571 | NW_017443591.1 | Scaff40 | NW_017443591.1: 871325–873488 | + | XP_018829455.1 | JrSCL4b | 252–623 |
| JrSCL3d-e | LOC108999242 | NW_017388893.1 | Scaff5 | NW_017388893.1: 2740337–2743452 | + | XP_018831643.1 | JrSCL3d | 46–468 |
| XP_018831644.1 | JrSCL3e | 46–468 | ||||||
| JrRGL1c | LOC109001324 | NW_017442404.1 | Scaff23 | NW_017442404.1: 246803–250094 | − | XP_018834108.1 | JrRGL1c | 310–676 |
| JrSCL21e | LOC109001839 | NW_017443600.1 | Scaff42 | NW_017443600.1: 47744–51063 | − | XP_018834825.1 | JrSCL21e | 315–681 |
| JrSHRc | LOC109002462 | NW_017441391.1 | Scaff22 | NW_017441391.1: 33841–36019 | − | XP_018835769.1 | JrSHRc | 110–490 |
| JrSCL33a-b | LOC109002666 | NW_017443009.1 | Scaff29 | NW_017443009.1: 917876–919261 | + | XP_018836065.1 | JrSCL33a | 367–737 |
| XP_018836066.1 | JrSCL33b | 367–737 | ||||||
| JrSCL34a | LOC109002667 | NW_017388893.1 | Scaff5 | NW_017388893.1: 730620–732711 | + | XP_018836067.1 | JrSCL34a | 383–753 |
| JrSCL9 | LOC109002669 | NW_017443569.1 | Scaff37 | NW_017443569.1: 521973–524512 | + | XP_018836069.1 | JrSCL9 | 386–757 |
| JrSCLe | LOC109004170 | NW_017443629.1 | Scaff44 | NW_017443629.1: 436277–438894 | + | XP_018838179.1 | JrSCLe | 449–801 |
| JrSLN1 | LOC109006296 | NW_017437159.1 | Scaff19 | NW_017437159.1: 15109–18210 | + | XP_018841073.1 | JrSLN1 | 151–518 |
| JrGAIa | LOC109007807 | NW_017443578.1 | Scaff38 | NW_017443578.1: 1317343–1319989 | + | XP_018843202.1 | JrGAIa | 226–585 |
| JrRGL1d | LOC109011259 | NW_017443604.1 | Scaff43 | NW_017443604.1: 879171–881593 | + | XP_018847922.1 | JrRGL1d | 156–525 |
| JrSCL22a | LOC109011601 | NW_017442999.1 | Scaff28 | NW_017442999.1: 59746–62789 | + | XP_018848419.1 | JrSCL22a | 438–793 |
| JrPAT1e-h | LOC109012627 | NW_017443590.1 | Scaff39 | NW_017443590.1: 1210837–1213906 | + | XP_018849898.1 | JrPAT1e | 176–546 |
| XP_018849899.1 | JrPAT1f | 176–546 | ||||||
| XP_018849900.1 | JrPAT1g | 176–546 | ||||||
| XP_018849901.1 | JrPAT1h | 176–546 | ||||||
| JrSCL34b | LOC109013013 | NW_017443590.1 | Scaff39 | NW_017443590.1: 1237365–1238906 | − | XP_018850468.1 | JrSCL34b | 383–758 |
| JrSCL33c-d | LOC109013014 | NW_017389181.1 | Scaff11 | NW_017389181.1: 2256–5719 | − | XP_018850470.1 | JrSCL33c | 385–759 |
| XP_018850471.1 | JrSCL33d | 385–759 | ||||||
| JrSCL14c | LOC109013019 | NW_017417453.1 | Scaff18 | NW_017417453.1: 8–1329 | − | XP_018850477.1 | JrSCL14c | 328–699 |
| JrCIGRa-b | LOC109014308 | NW_017443037.1 | Scaff31 | NW_017443037.1: 144211–146190 | − | XP_018852274.1 | JrCIGRa | 207–576 |
| XP_018852283.1 | JrCIGRb | 207–576 | ||||||
| JrSCL22b | LOC109015811 | NW_017443532.1 | Scaff33 | NW_017443532.1: 1336635–1338234 | + | XP_018853819.1 | JrSCL22b | 386–747 |
| JrSLR1 | LOC109015902 | NW_017389006.1 | Scaff9 | NW_017389006.1: 187337–190408 | + | XP_018853896.1 | JrSLR1 | 151–449 |
| JrSCLf | LOC109017304 | NW_017389344.1 | Scaff12 | NW_017389344.1: 736656–738728 | − | XP_018855146.1 | JrSCLf | 1–309 |
| JrSCL3f | LOC109020246 | NW_017399977.1 | Scaff17 | NW_017399977.1: 832–2407 | + | XP_018858211.1 | JrSCL3f | 46–465 |