Table I.
Primer sequences for SNP genotyping.
Gene | SNPs | Primer sequence | Annealing temperature (°C) |
---|---|---|---|
APOBEC3A | rs7286317 | F: 5′-ACGTTGGATGGTCAGGAGATCGAGACCATC-3′ | 45.1 |
R: 5′-ACGTTGGATGCACGCCTGGCTAATTTTTTG-3′ | |||
rs7290153 | F: 5′-ACGTTGGATGGGAAGATTCTTAATTTTGTG-3′ | 45.5 | |
R: 5′-ACGTTGGATGGATTATGCTCAATATTCTCAG-3′ | |||
APOBEC3B | Rs2267398 | F: 5′-ACGTTGGATGTTCTCCCTTCCTTGGTGTCG-3′ | 46.1 |
R: 5′-ACGTTGGATGATGCGTCCCCTCTTCCAAC-3′ | |||
rs2267401 | F: 5′-ACGTTGGATGTCTCTCAGCTGGGTCTGGA-3′ | 52.4 | |
R: 5′-ACGTTGGATGGGACCCAACGGAATTGCAAA-3′ | |||
rs2076109 | F: 5′-ACGTTGGATGAGAGGAAGCACATTTCTGCG-3′ | 49.6 | |
R: 5′-ACGTTGGATGTGCTCCCCCTCTCAGAGCAT-3′ | |||
APOBEC3H | Rs56695217 | F: 5′-ACGTTGGATGCCTTGTAATTTGCCCACCTC-3′ | 47.0 |
R: 5′-ACGTTGGATGAAGAACAAAGGCCAGATGCG-3′ | |||
Rs139292 | F: 5′-ACGTTGGATGTCAGCTGGTAACACAAGAGG-3′ | 58.2 | |
R: 5′-ACGTTGGATGAGCCGAAACATTCCGCTTAC-3′ | |||
Rs139297 | F: 5′-ACGTTGGATGTTGCACCAGTGGTAGTACAG-3′ | 48.9 | |
R: 5′-ACGTTGGATGGCTGGTTGACTTCATCAAGG-3′ | |||
Rs139302 | F: 5′-ACGTTGGATGCAGGACAGTGCCTCACCTT-3′ | 49.1 | |
R: 5′-ACGTTGGATGCCTTCAACCCCTATAAGATG-3′ | |||
Rs139316 | F: 5′-ACGTTGGATGCCAGGGAAAGTCATCTTGAG-3′ | 46.7 | |
R: 5′-ACGTTGGATGAAGAAGTTTGCAGCTTGGAC-3′ |
SNP, single nucleotide polymorphism; F, forward; R, reverse; APOBEC3, apolipoprotein B mRNA-editing catalytic polypeptide-like 3.