Table 1.
Oligo | Positiona | Sequence | Kd (μM) for various TF dimers | ||||||
---|---|---|---|---|---|---|---|---|---|
Site | Context | CREB/ATF1 | CREB | ATF1 | c-Jun/c-Fos | c-Jun/ATF2 | |||
CREb | – | −349/−315 | consensus | TGACGTCA | 0.06 | 0.07 | 0.03 | 0.15 | 0.05 |
CRE1 | −357/−350 | −368/−336 | wt | CCACGTCA | 0.06 | 0.56 | 0.05 | 3 | 2 |
mutant | CCAaaaat | 84 | 47 | 32 | |||||
CRE2 | −335/−329 | −349/−315 | wt | TG-CGTGA | 13 | 66 | 16 | n.d.c | n.d.c |
mutant | Ta-aaTGA | n.d.c | 109 | 48 | |||||
CRE1+ CRE2 | As above | −366/−298 | wt | As above | 0.05 | 1.6 | 0.08 | ||
mut CRE1 | As above | 10 | 61 | 10 | |||||
TREb | – | −349/−315 | consensus | TGA-GTCA | 12 | 53 | 17 | 0.5 | 9 |
Position in the mouse IL-10 promoter, relative to TSS. Site = cis element, context = promoter region present in the oligonucleotide used for the binding assay.
The depicted consensus sequence (40) was inserted in the context of the IL-10 promoter −349/−315 oligonucleotide, replacing the CRE2 sequence. Similar results were obtained when it was inserted in the context of the TNFα promoter CRE region.
n.d., no binding detected.