Table 2.
Selected SNPs from SES algorithm with significance threshold equal to 0.05 (best method based on median squared error score).
| Variables | Locus | P-value | Beta coefficient | Threshold | GWAS | Conserved | Position |
|---|---|---|---|---|---|---|---|
| Fat | |||||||
| Chr13:1098152 | Rho-related GTP-binding -like | 0.007 | 1.60 | 0.01 | – | – | 3’ UTR |
| Chr21:19924408 | – | 0.006 | −1.238 | 0.01 | – | – | – |
| Chr8: 1385781 | Protection of telomeres 1 | 0.0024 | 1.55 | 0.01 | – | ✓ | Intron |
| Scaffol8147:18634 | Death-associated kinase 3-like | 0.015 | 0.7 | 0.05 | – | ✓ | Intron |
| Chr7:2453106 | Solute carrier family 41 member 1-like isoform X1-2 | 0.046 | 0.86 | 0.05 | – | – | Intron |
| Chr4:23265532 | NT-3 growth factor receptor isoform X1 | 0.017 | −2.25 | 0.05 | – | – | Upstream |