Table 4.
Selected SNPs from SES algorithm with significance threshold equal to 0.05 (best method based on median squared error score).
| Variables | Locus | P-value | Beta coefficient | Threshold | GWAS | Conserved | Position |
|---|---|---|---|---|---|---|---|
| Tag Weight | |||||||
| Chr2:2623351 | Tetratricopeptide repeat 36 | 0.0019 | 4.577 | 0.01 | ✓ | – | Upstream |
| Chr13:20883924 | DNA repair RAD50 | 0.0127 | 2.678 | 0.01 | – | ✓ | Intron |
| Chr13:20975921 | RNA-binding 27 isoform X1 | 0.0073 | 1.810 | 0.01 | ✓ | – | Intron |
| Chr22:18343985 | Zinc finger BED domain-containing 4-like | 0.0117 | −1.967 | 0.01 | ✓ | – | Upstream |
| Midasin isoform X2 | Downstream | ||||||
| Scaffold4139:36071 | Predicted uncharacterized protein LOC106518831, partial | 0.033 | −0.634 | 0.01 | – | ✓ | Upstream |
| Chr15:3260819 | Follistatin-related 1-like | 0.0124 | 3.106 | 0.05 | – | – | Downstream |
| Chr20:6671436 | UBA-like domain-containing 1 | 0.021 | 2.665 | 0.05 | – | ✓ | 2nd |
| Chr22:14483563 | Exostosin-1-like | 0.0448 | 4.898 | 0.05 | – | – | Intron |
| Scaffold14083:12192 | – | 0.042 | −1.349 | 0.05 | – | – | - |