Table 5.

Selected SNPs from SES algorithm with significance threshold equal to 0.05 (best method based on median squared error score).

Variables	Locus	P-value	Beta coefficient	Threshold	GWAS	Conserved	Position
Length/Width
Chr6:23799286	Phosphatase 1 regulatory subunit 3D-like	0.0052	0.0397	0.01	–	✓	3d
Chr1:20827142	Upstream: mucin-5AC-like isoform X1	0.049	0.026	0.01	–	✓	Upstream
Chr13:9665394	ATP-dependent RNA helicase DHX33	0.0211	0.048	0.01	–	✓	3d
Chr3:9671223	A-kinase anchor 9 isoform X3	0.0144	−0.0597	0.01	–	✓	2nd
Scaffold13177:8369	Phosphatase 1 regulatory subunit 3C	0.015	0.057	0.01	–	✓	Downstream
Chr8:11613979	Semaphorin-3A	0.0193	−0.025	0.05	–	✓	Intron
Chr22:2545133	Neurexin-3b isoform X3	0.049	−0.029	0.05	–	–	Intron
Scaffold5661:35982	–	0.049	0.031	0.05	–	✓	–