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. 2019 Aug 13;9:11769. doi: 10.1038/s41598-019-47985-w

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© The Author(s) 2019

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Solanaceae genome dynamics. (A) Dating of insertions for complete LTR retrotransposons in the various Solanaceae genomes. (B) Syntenic relationships between the chromosomes eggplant (E), tomato (T) and pepper (P). For the parameters used to define synthenic thresholds, see Supplementary Information 2.7. (C) Reconstruction of chromosome dynamics during Solanaceae evolution. Each chromosome of the hypothetical Solanaceae common ancestor is assigned a different colour. The reconstructed karyotypes of evolutionary intermediates are shown on the left, the actual karyotypes of extant species on the right. Chromosomal segments derived from each ancestral chromosome are painted with the corresponding colour, and the arrows indicate the orientation with respect to the ancestral chromosome segment. The minimum number of translocations and inversions occurring between two karyotypes are reported.