Table 3.
HBV RNA integration breakpoints and gene expression fold change
| Human location | Nearest gene | Location type | HBV location | HBV transcript | Supporting reads number | Nearest gene log2(fold change) |
|---|---|---|---|---|---|---|
| chr11:85195011 | DLG2 | intronic | 407834 | S protein | 9 | 1.283 |
| chr5:71146794 | MAP1B | intergenic | 408128 | S protein | 8 | 4.212 |
| chr17:33478111 | UNC45B | intronic | 407658 | S protein | 6 | -1.162 |
| chr1:200809476 | CAMSAP2 | intronic | 409112 | X protein | 12 | -0.923 |
| chr3:47015261 | CCDC12 | intronic | 409144 | X protein | 41 | 0.023 |
| chr9:140008690 | DPP7 | exonic | 409079 | X protein | 359 | -2.261 |
| chr7:25572926 | MIR148A | intergenic | 408983 | X protein | 16 | 0.003 |
| chr1:570051 | OR4F3 | intergenic | 409270 | X protein | 8 | - |
| chr12:20704358 | PDE3A | intronic | 408967 | X protein | 7 | -9.627 |
Chr: chromosome; -: no signal test.