Table I. Gene sets reduction after weighted set cover for three different enrichment analyses.
Data type | Gene sets | Number of enriched gene sets | Number of enriched gene sets after set cover | Genes covered |
---|---|---|---|---|
Colorectal cancer-associated genes (ORA) | GO Biological Process | 910 | 212 | 10,220 |
Gene expression in Basal vs Luminal A breast cancer (GSEA) | MSigDB C2 Canonical Pathways | 123 | 51 | 1,716 |
Protein abundance in Basal vs Luminal A breast cancer (GSEA) | MSigDB C2 Canonical Pathways | 97 | 47 | 1,432 |