TABLE 1.
Enriched WormExp gene sets for differentially expressed genes upon Ochrobactrum colonization.
| Category | Gene set | Counts | Bonferroni |
| Microbes | down by B. thuringiensis at 6 h (BT247, 1:10) (Yang) | 232 | 4.13E-149 |
| TF Targets | low-complexity elt-2 targets | 338 | 4.68E-133 |
| DAF/Insulin/food | down by daf-2 mutant (Knutson) | 171 | 7.24E-130 |
| Mutants | down by elt-2 RNAi under normoxia | 141 | 4.78E-90 |
| Microbes | up by PA14, 12 h | 106 | 1.29E-81 |
| DAF/Insulin/food | down by fasting (Lee) | 90 | 8.03E-65 |
| Microbes | down by Bt toxin, Cry5B | 110 | 7.36E-64 |
| Microbes | down by PA14, 12 h | 63 | 7.59E-62 |
| Microbes | down by S. aureus (Bond) | 84 | 2.05E-53 |
| Microbes | down by B. thuringiensis (BT247), 12 h | 157 | 2.32E-49 |
| DAF/Insulin/food | down by starved (Mueller) | 170 | 4.55E-48 |
| Microbes | down fed by E. coli HT115 vs. OP50 | 38 | 3.25E-47 |
| DAF/Insulin/food | up by daf-16 mutant (McElwee) | 90 | 1.84E-46 |
| Microbes | up by B. thuringiensis at 6 h (BT247, 1:10) (Yang) | 112 | 2.35E-41 |
| DAF/Insulin/food | down by daf-16 mutant (McElwee) | 95 | 3.11E-39 |
| Microbes | up by S. aureus, dependent on hlh-30 (Visvikis) | 100 | 1.07E-38 |
| Microbes | up by S. aureus (Bond) | 85 | 5.18E-36 |
| DAF/Insulin/food | down fed by Comamonas DA1877 vs. OP50 young adult | 67 | 8.49E-33 |
| DAF/Insulin/food | up by fasting (Lee) | 52 | 1.39E-25 |
| DAF/Insulin/food | up by starved (Mueller) | 140 | 3.55E-25 |
| DAF/Insulin/food | up fed by Comamonas DA1877 vs. OP50 young adult | 31 | 1.06E-23 |
| Mutants | up by elt-2 RNAi under normoxia | 39 | 3.64E-18 |
| Microbes | up fed by E. coli HT115 vs. OP50 | 19 | 1.21E-16 |
| DAF/Insulin/food | up by daf-2 mutant (Knutson) | 41 | 2.90E-13 |
| Microbes | up by Bt toxin, Cry5B | 46 | 4.86E-12 |
| Mutants | down hlh-30 mutant | 27 | 7.65E-12 |
The enriched gene sets (second column) are ordered according to their significance, as indicated by the Bonferroni-adjusted p-values (right column). The column counts shows the number of genes present in the current data set and that from the database. Detailed results are provided in Supplementary Table S1.