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Maximum likelihood phylogenetic tree obtained with IQ-TREE, based on the target SNPs, illustrating the genetic architecture of tomato and wild related species accessions in study. Solanum lycopersicum entries are in red, S. pimpinellifolium in blue, S. chmielewskii in yellow, S. neorickii in purple, S. arcanum in pink, S. pennellii in green, S. habrochaites in dark, and S. huaylasense in orange. Branches are colored according to the bootstrap values (red = 15 and green = 100).
