TABLE 2.
Numbers of aligning small RNA sequence reads from hypovirus-transfected wild type and mutants of Sclerotinia sclerotiorum.
| Read counts | Percent of aligned reads | ||||||
| Samples | Filtered read | IGR (% of tRNA derived small RNA) | CDS | Retrotransposons | Mitochondria | rRNA | Other |
| Ago2_SsHV2L_1 | 6510462 | 46.4 (42.7%) | 10.6 | 3.3 | 5.7 | 5.6 | 28.5 |
| Ago2_SsHV2L_2 | 6599083 | 46.7 (46.73%) | 9.3 | 2.9 | 5.6 | 5.8 | 29.7 |
| Ago2_VF_1 | 5895665 | 48.4 (31.46%) | 12.7 | 4.4 | 5.6 | 4.3 | 24.6 |
| Ago2_VF_2 | 5646987 | 49.1 (32.7%) | 13.5 | 4.8 | 5.2 | 3.9 | 23.5 |
| Ago4_SsHV2L_1 | 15140898 | 58.1 (68.9%) | 5.9 | 2.2 | 2.8 | 1.9 | 29.1 |
| Ago4_SsHV2L_2 | 8083962 | 49.4 (56.8%) | 8.2 | 3.0 | 4.5 | 8.0 | 26.9 |
| Ago4_VF_1 | 18251848 | 80.1 (78.6%) | 3.9 | 0.5 | 1.6 | 4.2 | 9.7 |
| Ago4_VF_2 | 13039613 | 83.0 (80.6%) | 3.5 | 0.5 | 1.8 | 2.8 | 8.4 |
| Dcl1_SsHV2L_1 | 6932872 | 32.9 (77.6%) | 2.2 | 0.2 | 1.7 | 24.9 | 38.1 |
| Dcl1_SsHV2L_2 | 7040569 | 52.5 (62.7%) | 5.3 | 2.3 | 2.6 | 9.2 | 28.1 |
| Dcl1_VF1 | 9213301 | 50.4 (57.8%) | 6.3 | 1.5 | 4.5 | 8.0 | 29.4 |
| Dcl1_VF2 | 9087471 | 32.7 (28.6%) | 5.6 | 0.9 | 4.2 | 19.8 | 36.8 |
| Dcl2_SsHV2L_1 | 14427517 | 43.6 (62.5%) | 5.6 | 2.3 | 4.6 | 4.9 | 38.9 |
| Dcl2_SsHV2L_2 | 11097593 | 43.2 (59.2%) | 6.7 | 3.0 | 4.2 | 5.5 | 37.3 |
| Dcl2_VF1 | 17041328 | 40.6 (35.4%) | 9.8 | 3.4 | 4.7 | 6.7 | 34.7 |
| Dcl2_VF2 | 13619703 | 50.0 (59.2%) | 5.6 | 1.8 | 4.7 | 7.2 | 30.8 |
| WTDK3_SsHV2L_1 | 15565013 | 63.7 (76.0%) | 5.1 | 1.7 | 3.1 | 3.4 | 23 |
| WTDK3_SsHV2L_2 | 14313982 | 39.2 (41.4%) | 9.4 | 4.4 | 2.8 | 1.2 | 43 |
| WTDK3_SsHV2L_3 | 14553278 | 40.8 (25.4%) | 11.6 | 4.5 | 8.5 | 2.8 | 31.8 |