Table 1.
Strongly differentially expressed lncRNAs in HNSCC tissues according to data published by Zou et al. [9]
| Gene name UCSC genome browser |
Chromosomal localisation | Size in bp | Alternative name | Neighbouring coding genes | lncRNA type | Expression in HNSCC tissues |
|---|---|---|---|---|---|---|
| ENSG00000233850.1 | 2q11.1 | 478 | LNC-MRPS5–2 | MAL | antisense | reduced |
| ENSG00000244128 | 3q26.1 | 563 | LINC01322 | SLITRK3 | divergent | increased |
| ENSG00000248240.1 | 5p12 | 572 | Lnc-NNT2 | C5orf34 | divergent | increased |
| ENSG00000152931 | 5q12.1 | 2316 | PART1 | PDE4D | antisense | reduced |
| ENSG00000249082 | 5q31.1 | 477 | LOC340074 | PITX1 | intragenic | reduced |
| ENSG00000228789 | 6p21.33 | 1980 | HCG 22 | MUC22 | intragenic | reduced |
| ENSG00000223485 | 6q27 | 647 | LINC01615 | THBS2 | intragenic | increased |
| ENSG00000253187.2 | 7p15.2 | 1129 | HOXA-AS4 | HOXA10 | antisense | increased |
| ENSG00000249395 | 8q21.11 | 1164 | CASC9 | HNF4G | intragenic | increased |
| ENSG00000235884.2 | 12p11.21 | 1645 | LINC00941 | CAPRIN2 | intragenic | increased |
| ENSG00000244306 | 14q11.2 | 4264 | LINC00516 | POTEM | intragenic | increased |
| ENSG00000225210.4 | 14q11.2 | 4119 | LINC01296 | POTEM | intragenic | increased |
| ENSG00000258661.1 | 14q13.3 | 2613 | NKX2–1-AS1 | NKX2–1 | antisense | reduced |
| ENSG00000184324.11 | Xq28 | 847 b | CSAG3 | MAGE-A2 | intragenic | increased |
CASC9 is bold printed as the main candidate investigated in this study and was identified by both data mining approaches