TABLE 2.
Variable region characteristics of AIIMS_329 and AIIMS_330 in the time frame of 90 to 117 months of agea
| Twin and age (mo) | No. of sequences (SGA amplicons) | V1 |
V2 |
V3 |
V4 |
V5 |
|||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Length | No. of PNGS | Length | No. of PNGS | Length | No. of PNGS | Length | No. of PNGS | Length | No. of PNGS | ||
| AIIMS_329 | |||||||||||
| 90 | 26 | 26 | 2 | 42 | 2 | 36 | 1 | 30 | 3 | 16 | 2 |
| 112 | 24 | 28 | 5 | 56 | 2 | 36 | 1 | 37 | 6 | 12 | 2 |
| 117 | 29 | 40 | 5 | 50 | 2 | 36 | 1 | 38 | 5 | 12 | 1 |
| P value | **** | **** | **** | **** | **** | ||||||
| AIIMS_330 | |||||||||||
| 90 | 24 | 24 | 4 | 44 | 3 | 37 | 1 | 37 | 5 | 17 | 2 |
| 112 | 20 | 23 | 4 | 55 | 5 | 37 | 1 | 36 | 3 | 17 | 2 |
| 117 | 21 | 34 | 4 | 59 | 5 | 37 | 1 | 36 | 5 | 16 | 2 |
| P value | **** | **** | **** | ||||||||
The variable loop length (in nucleotides) and number of PNGS of longitudinal SGA-amplified amplicons of AIIMS_329 and AIIMS_330 were calculated using the Variable Region Characteristics tool available at the HIV Database (https://www.hiv.lanl.gov/content/sequence/VAR_REG_CHAR/index.html). The Kruskal-Wallis test was used to compare the difference in variable loop length and number of PNGS of the SGA amplicons in the time frame of 90 months to 117 months. Given are the average loop length and PNGS of all SGA amplicons for the respective time point. ****, P < 0.0001.