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. 2019 Aug 8;75(3):483–497.e9. doi: 10.1016/j.molcel.2019.06.002
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Mouse monoclonal anti-BRCA1 Santa Cruz Biotechnology Cat# sc-6954; RRID: AB_626761
Rabbit anti-MDC1 Abcam Cat# ab11171; RRID: AB_297810
Rabbit anti-RAP80 Bethyl Laboratories Cat# A300-764; RRID: AB_2779443
Mouse anti-GFP Roche Cat# 11814460001; RRID: AB_390913
Mouse anti-tubulin Sigma-Aldrich Cat# T6199; RRID: AB_477583
Rabbit anti-SHMT2 Sigma-Aldrich Cat# SAB1100388; RRID: AB_10610173
Rabbit anti-ABRO1 Abcam Cat# ab74333; RRID: AB_1280902
Alexa Fluor 488-conjugated donkey anti-rabbit antibody ThermoFisher Cat# R37118; RRID: AB_2536183

Bacterial and Virus Strains

Escherichia coli BL21-CodonPlus (DE3)-RIL Agilent Technologies Cat# 230245

Chemicals, Peptides, and Recombinant Proteins

SigmaFast protease inhibitor cocktail Sigma-Aldrich Cat# S8820
Strep-Tactin resin iba Cat# 2-1201-025
TEV protease This paper N/A
Human and mouse BRCA1-A complexes This paper N/A
Human and mouse BRISC complexes This paper N/A
K63-linked di-ubiquitin (K63-diUb) Emma Branigan, Ronald T. Hay N/A
SUMO-2-K63-(Ub)2 Emma Branigan, Ronald T. Hay N/A
K63-(Ub)2 Boston Biochem Cat# UC-300B
K63-(Ub)3 Boston Biochem Cat# UC-315B
K63-(Ub)4 Boston Biochem Cat# UC-310B
peptide p-Ser404 (GGGFGEYpSRSPTF) Biomatik Custom synthesis
Peptide p-Ser406 (GGGFGEYSRpSPTF Biomatik Custom synthesis
peptides p-Ser404/406 (GGGFGEYpSRpSPTF) Biomatik Custom synthesis
BirA enzyme This paper N/A
MitoTracker Red CMXRos Thermo Fisher Scientific Cat# M7512
Alexa Fluor 633-conjugated wheat germ agglutinin Thermo Fisher Scientific Cat# W21404
K63-(Ub)4, TAMRA label on proximal ubiquitin LifeSensors Cat# SI6304T
K63-(Ub)4, TAMRA label on distal ubiquitin Boston Biochem Custom synthesis

Critical Commercial Assays

IQF DiUb K63 assay Life Sensors Cat# DU0102, DU6301

Deposited Data

Original image files This paper; Mendeley Data https://dx.doi.org/10.17632/8ntswhp8d5.1
Structure of BRCA1-A complex This paper PDB: 6GVW
Map of BRISC-SHMT2 complex This paper EMDB: EMDB-0132
Structure of BRISC-SHMT2 complex This paper PDB: 6H3C
PLP-bound SHMT2 structure Giardina et al., 2015 PDB: 5V7I
Apo-SHMT2 Unpublished data PDB: 6DK3
COP9 signalosome Lingaraju et al., 2014 PDB: 4D10
APC2-UBCH10 complex Brown et al., 2015 PDB: 4YII
Crystal Structure of the SpRpn10 VWA domain Riedinger et al., 2010 PDB: 2X5N
Structure of CfBRCC36-CfKIAA0157 complex Zeqiraj et al., 2015 PDB: 5CW3

Experimental Models: Cell Lines

Spodoptera frugiperda Sf9 cells Thermo Fisher Scientific Cat# 11496015
Tni insect cells Expression Systems Cat# 94-002F
Human osteosarcoma (U2OS) cells Dr. Durocher N/A
U2OS Rap80-KO Dr. Durocher N/A
HEK293T Dr. Peters N/A

Recombinant DNA

pFastBac MmABRAXAS This paper N/A
pFastBac MmABRO1 This paper N/A
pFastBac MmBRCC36 This paper N/A
pFastBac MmBRE This paper N/A
pFastBac MmMERIT40 This paper N/A
pFastBac MmRAP80 This paper N/A
pFastBac MmRAP80 250-413 This paper N/A
pFastBac HsABRO1 This paper N/A
pFastBac HsBRCC36 This paper N/A
pFastBac HsBRE This paper N/A
pFastBac HsMERIT40 This paper N/A
pFastBac SHMT2 This paper N/A
pFastBac Strep-BirA-HsABRO1 This paper N/A
SHMT2α SGC structural genomics consortium 3OU5
GFP-RAP80(WT) Dr. A.M. Jetten N/A
GFP-RAP80(ΔAIR) (Δ274-334) This paper N/A
pFasBac- mouse ABRO1 (1-260) - ABRAXAS (269-407) This paper N/A
Human BRCA1-BRCT Wu et al., 2016 N/A
pFastBac- ABRAXAS-sortase site -FLAG tag at the C terminus (ABRAXAS 1-394 - LPETGDYKDHDGDYKDHDIDYKDDDDK) This paper N/A

Software and Algorithms

Fiji Schindelin et al., 2012 https://fiji.sc
DYNAFIT Kuzmič, 2009 http://www.biokin.com/dynafit/
Prism https://www.graphpad.com
XDS Kabsch, 2010 http://xds.mpimf-heidelberg.mpg.de
DIALS Winter et al., 2018 https://dials.diamond.ac.uk
POINTLESS Evans, 2011 http://www.ccp4.ac.uk
AIMLESS Evans and Murshudov, 2013 http://www.ccp4.ac.uk
STARANISO Global Phasing http://staraniso.globalphasing.org
SHELXD Sheldrick, 2008 http://shelx.uni-goettingen.de
PHASER McCoy et al., 2007 https://www.phaser.cimr.cam.ac.uk/
PIRATE Cowtan, 2000 http://www.ccp4.ac.uk
PARROT Cowtan, 2010 http://www.ccp4.ac.uk
PHENIX Adams et al., 2010 https://www.phenix-online.org
COOT Emsley et al., 2010 https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/
ISOLDE Croll, 2018 https://isolde.cimr.cam.ac.uk
REFMAC Nicholls et al., 2012 http://www.ccp4.ac.uk
AUTOBUSTER Global Phasing https://www.globalphasing.com
CNS Schröder et al., 2010 http://cns-online.org/v1.3/
ROSETTA Wang et al., 2016 https://www.rosettacommons.org
PDB-REDO Joosten et al., 2014 https://pdb-redo.eu
MOLPROBITY Chen et al., 2010 http://molprobity.biochem.duke.edu
CryoFLARE A.D.S., unpublished data http://www.cryoflare.org
motioncor2 Li et al., 2013 https://msg.ucsf.edu/software
GCTF Zhang, 2016 https://www.mrc-lmb.cam.ac.uk/kzhang/
Gautomatch https://www.mrc-lmb.cam.ac.uk/kzhang/
RELION Scheres, 2012 https://www3.mrc-lmb.cam.ac.uk/relion
EMAN2 Tang et al., 2007 https://blake.bcm.edu/emanwiki/
ResMap Kucukelbir et al., 2014 http://resmap.sourceforge.net