Antibodies |
|
Mouse monoclonal anti-BRCA1 |
Santa Cruz Biotechnology |
Cat# sc-6954; RRID: AB_626761
|
Rabbit anti-MDC1 |
Abcam |
Cat# ab11171; RRID: AB_297810
|
Rabbit anti-RAP80 |
Bethyl Laboratories |
Cat# A300-764; RRID: AB_2779443 |
Mouse anti-GFP |
Roche |
Cat# 11814460001; RRID: AB_390913
|
Mouse anti-tubulin |
Sigma-Aldrich |
Cat# T6199; RRID: AB_477583
|
Rabbit anti-SHMT2 |
Sigma-Aldrich |
Cat# SAB1100388; RRID: AB_10610173
|
Rabbit anti-ABRO1 |
Abcam |
Cat# ab74333; RRID: AB_1280902
|
Alexa Fluor 488-conjugated donkey anti-rabbit antibody |
ThermoFisher |
Cat# R37118; RRID: AB_2536183
|
|
Bacterial and Virus Strains |
|
Escherichia coli BL21-CodonPlus (DE3)-RIL |
Agilent Technologies |
Cat# 230245 |
|
Chemicals, Peptides, and Recombinant Proteins |
|
SigmaFast protease inhibitor cocktail |
Sigma-Aldrich |
Cat# S8820 |
Strep-Tactin resin |
iba |
Cat# 2-1201-025 |
TEV protease |
This paper |
N/A |
Human and mouse BRCA1-A complexes |
This paper |
N/A |
Human and mouse BRISC complexes |
This paper |
N/A |
K63-linked di-ubiquitin (K63-diUb) |
Emma Branigan, Ronald T. Hay |
N/A |
SUMO-2-K63-(Ub)2
|
Emma Branigan, Ronald T. Hay |
N/A |
K63-(Ub)2
|
Boston Biochem |
Cat# UC-300B |
K63-(Ub)3
|
Boston Biochem |
Cat# UC-315B |
K63-(Ub)4
|
Boston Biochem |
Cat# UC-310B |
peptide p-Ser404 (GGGFGEYpSRSPTF) |
Biomatik |
Custom synthesis |
Peptide p-Ser406 (GGGFGEYSRpSPTF |
Biomatik |
Custom synthesis |
peptides p-Ser404/406 (GGGFGEYpSRpSPTF) |
Biomatik |
Custom synthesis |
BirA enzyme |
This paper |
N/A |
MitoTracker Red CMXRos |
Thermo Fisher Scientific |
Cat# M7512 |
Alexa Fluor 633-conjugated wheat germ agglutinin |
Thermo Fisher Scientific |
Cat# W21404
|
K63-(Ub)4, TAMRA label on proximal ubiquitin |
LifeSensors |
Cat# SI6304T |
K63-(Ub)4, TAMRA label on distal ubiquitin |
Boston Biochem |
Custom synthesis |
|
Critical Commercial Assays |
|
IQF DiUb K63 assay |
Life Sensors |
Cat# DU0102, DU6301 |
|
Deposited Data |
|
Original image files |
This paper; Mendeley Data |
https://dx.doi.org/10.17632/8ntswhp8d5.1 |
Structure of BRCA1-A complex |
This paper |
PDB: 6GVW
|
Map of BRISC-SHMT2 complex |
This paper |
EMDB: EMDB-0132 |
Structure of BRISC-SHMT2 complex |
This paper |
PDB: 6H3C
|
PLP-bound SHMT2 structure |
Giardina et al., 2015 |
PDB: 5V7I
|
Apo-SHMT2 |
Unpublished data |
PDB: 6DK3
|
COP9 signalosome |
Lingaraju et al., 2014 |
PDB: 4D10
|
APC2-UBCH10 complex |
Brown et al., 2015 |
PDB: 4YII
|
Crystal Structure of the SpRpn10 VWA domain |
Riedinger et al., 2010 |
PDB: 2X5N
|
Structure of CfBRCC36-CfKIAA0157 complex |
Zeqiraj et al., 2015 |
PDB: 5CW3
|
|
Experimental Models: Cell Lines |
|
Spodoptera frugiperda Sf9 cells |
Thermo Fisher Scientific |
Cat# 11496015 |
Tni insect cells |
Expression Systems |
Cat# 94-002F |
Human osteosarcoma (U2OS) cells |
Dr. Durocher |
N/A |
U2OS Rap80-KO |
Dr. Durocher |
N/A |
HEK293T |
Dr. Peters |
N/A |
|
Recombinant DNA |
|
pFastBac MmABRAXAS |
This paper |
N/A |
pFastBac MmABRO1 |
This paper |
N/A |
pFastBac MmBRCC36 |
This paper |
N/A |
pFastBac MmBRE |
This paper |
N/A |
pFastBac MmMERIT40 |
This paper |
N/A |
pFastBac MmRAP80 |
This paper |
N/A |
pFastBac MmRAP80 250-413 |
This paper |
N/A |
pFastBac HsABRO1 |
This paper |
N/A |
pFastBac HsBRCC36 |
This paper |
N/A |
pFastBac HsBRE |
This paper |
N/A |
pFastBac HsMERIT40 |
This paper |
N/A |
pFastBac SHMT2 |
This paper |
N/A |
pFastBac Strep-BirA-HsABRO1 |
This paper |
N/A |
SHMT2α |
SGC structural genomics consortium |
3OU5 |
GFP-RAP80(WT) |
Dr. A.M. Jetten |
N/A |
GFP-RAP80(ΔAIR) (Δ274-334) |
This paper |
N/A |
pFasBac- mouse ABRO1 (1-260) - ABRAXAS (269-407) |
This paper |
N/A |
Human BRCA1-BRCT |
Wu et al., 2016 |
N/A |
pFastBac- ABRAXAS-sortase site -FLAG tag at the C terminus (ABRAXAS 1-394 - LPETGDYKDHDGDYKDHDIDYKDDDDK) |
This paper |
N/A |
|
Software and Algorithms |
|
Fiji |
Schindelin et al., 2012 |
https://fiji.sc |
DYNAFIT |
Kuzmič, 2009 |
http://www.biokin.com/dynafit/ |
Prism |
|
https://www.graphpad.com |
XDS |
Kabsch, 2010 |
http://xds.mpimf-heidelberg.mpg.de |
DIALS |
Winter et al., 2018 |
https://dials.diamond.ac.uk |
POINTLESS |
Evans, 2011 |
http://www.ccp4.ac.uk |
AIMLESS |
Evans and Murshudov, 2013 |
http://www.ccp4.ac.uk |
STARANISO |
Global Phasing |
http://staraniso.globalphasing.org |
SHELXD |
Sheldrick, 2008 |
http://shelx.uni-goettingen.de |
PHASER |
McCoy et al., 2007 |
https://www.phaser.cimr.cam.ac.uk/ |
PIRATE |
Cowtan, 2000 |
http://www.ccp4.ac.uk |
PARROT |
Cowtan, 2010 |
http://www.ccp4.ac.uk |
PHENIX |
Adams et al., 2010 |
https://www.phenix-online.org |
COOT |
Emsley et al., 2010 |
https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/ |
ISOLDE |
Croll, 2018 |
https://isolde.cimr.cam.ac.uk |
REFMAC |
Nicholls et al., 2012 |
http://www.ccp4.ac.uk |
AUTOBUSTER |
Global Phasing |
https://www.globalphasing.com |
CNS |
Schröder et al., 2010 |
http://cns-online.org/v1.3/ |
ROSETTA |
Wang et al., 2016 |
https://www.rosettacommons.org |
PDB-REDO |
Joosten et al., 2014 |
https://pdb-redo.eu |
MOLPROBITY |
Chen et al., 2010 |
http://molprobity.biochem.duke.edu |
CryoFLARE |
A.D.S., unpublished data |
http://www.cryoflare.org |
motioncor2 |
Li et al., 2013 |
https://msg.ucsf.edu/software |
GCTF |
Zhang, 2016 |
https://www.mrc-lmb.cam.ac.uk/kzhang/ |
Gautomatch |
|
https://www.mrc-lmb.cam.ac.uk/kzhang/ |
RELION |
Scheres, 2012 |
https://www3.mrc-lmb.cam.ac.uk/relion |
EMAN2 |
Tang et al., 2007 |
https://blake.bcm.edu/emanwiki/ |
ResMap |
Kucukelbir et al., 2014 |
http://resmap.sourceforge.net |