. 2019 Jul 26;20(15):3667. doi: 10.3390/ijms20153667

Table 1.

List of potential candidate genes found in regions identified by marker-trait associations for disease resistance, favorable allele (bold), and SNP effects in 125 SHWs.

Trait ^a	SNP_ID ^b	PVE ^c	Allele ^d	Effect	−Log₁₀(p)	Gene-ID	Potential Candidate Gene	Trait ^e	References ^f
Yr	S3B_544810753	6.4	G/A	−0.09	8.21	TraesCS3B01G338200	Calcium-binding protein	Yr	[46]
Lr	S4D_73425349	18.5	C/T	0.27	10.14	TraesCS4D01G096900	Leucine-rich repeat transmembrane neuronal protein 3	Yr, Sr	[38,39,40]
Sr	S7B_706787545	15.1	A/G	15.54	7.95	TraesCS7B01G441400	ARM repeat superfamily protein	Tanspot	[47]
Yr	S2A_34483654	12.4	T/G	−0.13	9.63	TraesCS2A01G076700	Elongation factor 1 alpha a	Yr	[43]
Yr	S2A_34483654	12.4	T/G	−0.13	9.63	TraesCS2A01G076800	F-box protein	Lr, Sr, Yr	[41,42,43]
Yr	S7B_730117633	3.8	C/A	−0.09	7.54	TraesCS7B01G473300	F-box protein	Lr, Sr, Yr	[41,42,43]
Sr	S1A_516079891	9.9	G/C	−0.09	6.29	TraesCS1A01G325300	F-box protein	Lr, Sr, Yr	[41,42,43]
Yr	S6B_669910684	0.9	C/G	0.15	8.03	TraesCS6B01G394600	F-box protein	Lr, Sr, Yr	[41,42,43]
Sr	S5B_360428982	10.8	T/C	−0.07	6.95	TraesCS5B01G199700	F-box protein	Lr, Sr, Yr	[41,42,43]
Lr	S5A_158912458	8.7	G/A	−5.51	4.96	TraesCS5A01G103000	F-box protein	Lr, Sr, Yr	[41,42,43]
Lr	S7A_701569874	8.5	A/G	0.15	8.60	TraesCS7A01G517300	Leucine-rich repeat protein kinase family protein	Lr, Sr, Yr	[41,42,43]
Sr	S4B_4791631	3.0	G/C	−6.10	7.43	TraesCS4B01G007000	Leucine-rich repeat receptor-like protein kinase family protein	Sr, Yr	[38,39,40]
Sr	S2D_381953220	8.4	G/T	8.33	7.48	TraesCS2D01G299700	Peroxidase	Sr, Tanspot	[47,48]
Lr	S3A_721353764	14.6	G/T	3.51	7.78	TraesCS3A01G495400	Leucine rich repeat N-terminal domain	Sr, Yr	[38,39,40]
Sr	S1A_592532938	6.4	G/A	−7.50	5.54	TraesCS1A01G444500	Leucine rich repeat N-terminal domain	Sr, Yr	[38,39,40]
Lr	S2D_644835165	1.4	G/T	0.07	5.89	TraesCS2D01G586500	WAT1-related protein/EamA-like transporter family	Fungal pathogen	[49]
Lr	S7A_708435571	19.4	T/C	−0.18	8.20	TraesCS7A01G526900	WAT1-related protein/EamA-like transporter family	Fungal pathogen	[49]

^a Lr, leaf rust; Sr, stem rust; Yr, stripe rust. ^b S+chromosome_position in bp, ^c PVE, phenotypic variance explained (%), ^d Allele that is in bold text is the favorable allele that increases the disease resistance, ^e Trait identified in the past^{, f} References for the association of annotation with traits.