Table 1.
Overview of DEGs involved in KEGG pathway
| No. | Pathway ID | DEGs with pathway annotation (19) | All genes with pathway annotation (577) | KEGG pathway | p value | Q value | Gene list | KO list |
|---|---|---|---|---|---|---|---|---|
| 1 | ko02020 | 3 (15.79%) | 31 (5.37%) | Two-component system | 0.015012085 | 0.03940672 | KQ11_GM000490, KQ11_GM000492, KQ11_GM000491, | K07793, K07795, K07794 |
| 2 | ko00360 | 3 (15.79%) | 13 (2.25%) | Phenylalanine metabolism | 0.000500975 | 0.01052047 | KQ11_GM003846, KQ11_GM003870, KQ11_GM001828, | K00276, K00146, K05710 |
| 3 | ko00260 | 2 (10.53%) | 18 (3.12%) | Glycine, serine and threonine metabolism | 0.018086604 | 0.04220208 | KQ11_GM003846, KQ11_GM000418, | K00276, K13745 |
| 4 | ko01220 | 1 (5.26%) | 9 (1.56%) | Degradation of aromatic compounds | 0.032243512 | 0.06771138 | KQ11_GM001828, | K05710 |
| 5 | ko02060 | 1 (5.26%) | 5 (0.87%) | Phosphotransferase system (PTS) | 0.009694457 | 0.02908337 | KQ11_GM003720, | K02804 |
| 6 | ko02010 | 6 (31.58%) | 63 (10.92%) | ABC transporters | 0.002328422 | 0.01588777 | KQ11_GM003996, KQ11_GM003998, KQ11_GM003995, KQ11_GM000625, KQ11_GM000624, KQ11_GM000623, | K02015, K02016, K02013, K02012, K02011, K02010 |
| 7 | ko00630 | 1 (5.26%) | 32 (5.55%) | Glyoxylate and dicarboxylate metabolism | 0.284432368 | 0.37331748 | KQ11_GM000606, | K01638 |
| 8 | ko00620 | 1 (5.26%) | 29 (5.03%) | Pyruvate metabolism | 0.246513313 | 0.34511864 | KQ11_GM000606, | K01638 |
| 9 | ko00643 | 1 (5.26%) | 3 (0.52%) | Styrene degradation | 0.003026241 | 0.01588777 | KQ11_GM003870, | K00146 |
| 10 | ko00520 | 3 (15.79%) | 27 (4.68%) | Amino sugar and nucleotide sugar metabolism | 0.009121947 | 0.02908337 | KQ11_GM003720, KQ11_GM003723, KQ11_GM003721, | K02804, K01443, K02564 |
| 11 | ko00650 | 1 (5.26%) | 15 (2.60%) | Butanoate metabolism | 0.083581921 | 0.12537288 | KQ11_GM000543, | K01029 |
| 12 | ko00410 | 1 (5.26%) | 2 (0.35%) | Beta-Alanine metabolism | 0.00102903 | 0.01080481 | KQ11_GM003846, | K00276 |
| 13 | ko00280 | 1 (5.26%) | 12 (2.08%) | Valine, leucine and isoleucine degradation | 0.055721077 | 0.1063766 | KQ11_GM000543, | K01029 |
| 14 | ko00640 | 1 (5.26%) | 15 (2.60%) | Propanoate metabolism | 0.083581921 | 0.12537288 | KQ11_GM000991, | K18382 |
| 15 | ko00350 | 1 (5.26%) | 13 (2.25%) | Tyrosine metabolism | 0.064571367 | 0.11299989 | KQ11_GM003846, | K00276 |
| 16 | ko00072 | 1 (5.26%) | 5 (0.87%) | Synthesis and degradation of ketone bodies | 0.009694457 | 0.02908337 | KQ11_GM000543, | K01029 |