Name of Material/ Equipment	Company	Catalog Number	Comments/Description
Anti-FLAG Affinity Gel	Sigma	A2220
ATP, [γ−32P]- 3000Ci/mmol 10mCi/ml EasyTide, 250μCi	PerkinElmer	BLU502A250UC
BD Disposable Syringes with Luer-Lok™ Tips (200)	Fisher	14–823–435
Betaine 5M	Sigma	B0300
biotin-dATP	TriLink	N-5002
biotin-dCTP	Perkin Elmer	NEL540001EA
Branson Sonifier, Model SSE-1	Branson
CircLigase I	VWR	76081–606
DMEM, High Glucose	ThermoFisher	11995–065
DNA load buffer NEB	NEB
Dynabeads Protein A	LifeTech	10002D
Flp-In-T-REx 293 Cell Line	ThermoFisher	R78007
GeneRuler Low Range DNA Ladder	ThermoScientific	FERSM1203
Hygromycin B	ThermoFisher	10687010
Mini-PROTEAN TBE Gel 10 well	Bio-Rad	4565013
Mini-PROTEAN TBE-Urea Gel	Bio-Rad	4566033
miRCAT-33 adapter 5′-TGGAATTCTCGGGTGCCAAGGddC-3′	Any		this protocol is only compatible with the Illumina sequencing platform
Mirus transIT-X2 transfection reagent	Mirus	MIR 6004
Mth RNA ligase	NEB	E2610S
PE1.0 5′-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATC*T-3′	Any		this protocol is only compatible with the Illumina sequencing platform
PE2.0 5′-CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATC*T-3′	Any		this protocol is only compatible with the Illumina sequencing platform
Phenol/Chloroform/Isoamyl Alcohol (25:24:1, pH 6.7, 100ml)	Fisher	BP1752I-100
Purple Gel Loading Dye (6x)	NEB	NEB #7025
Q5 DNA Polymerase	NEB	M0491S/L
RNase I, E. coli, 1000 units	Eppicenter	N6901K
SPIN-X column	Corning	CLS8160–24EA
Streptavidin beads	ThermoFisher	60210
Superscript III (SSIII)	ThermoScientific	18080044
SybrGold	ThermoFisher	S11494
T4 Polynucleotide Kinase-2500U	NEB	M0201L
T4RNL2 Tr. K227Q	NEB	M0351S
Tetracycline	Sigma	87128
Thermostable 5´ App DNA/RNA Ligase	NEB	M0319S
TruSeq_SE1 5′-pGGCACTANNNNNAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT-SPACER 18-CTCGGCATTCCTGCTGAACCGCTCTTCCGATCTCCTTGGCACCCGAGAATTCCA-3′	Any		this protocol is only compatible with the Illumina sequencing platform
TruSeq_SE10 5′-pGGTGTTCNNNNNAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT-SPACER 18-CTCGGCATTCCTGCTGAACCGCTCTTCCGATCTCCTTGGCACCCGAGAATTCCA-3′	Any		this protocol is only compatible with the Illumina sequencing platform
TruSeq_SE11 5′-pGGTAAGTNNNNNAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT-SPACER 18-CTCGGCATTCCTGCTGAACCGCTCTTCCGATCTCCTTGGCACCCGAGAATTCCA-3′	Any		this protocol is only compatible with the Illumina sequencing platform
TruSeq_SE12 5′-pGGAGATGNNNNNAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT-SPACER 18-CTCGGCATTCCTGCTGAACCGCTCTTCCGATCTCCTTGGCACCCGAGAATTCCA-3′	Any		this protocol is only compatible with the Illumina sequencing platform
TruSeq_SE2 5′-pGGGTAGCNNNNNAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT-SPACER 18-CTCGGCATTCCTGCTGAACCGCTCTTCCGATCTCCTTGGCACCCGAGAATTCCA-3′	Any		this protocol is only compatible with the Illumina sequencing platform
TruSeq_SE35′-pGGTCGATNNNNNAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT-SPACER 18-CTCGGCATTCCTGCTGAACCGCTCTTCCGATCTCCTTGGCACCCGAGAATTCCA-3′	Any		this protocol is only compatible with the Illumina sequencing platform
TruSeq_SE4 5′-pGGCCTCGNNNNNAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT-SPACER 18-CTCGGCATTCCTGCTGAACCGCTCTTCCGATCTCCTTGGCACCCGAGAATTCCA-3′	Any		this protocol is only compatible with the Illumina sequencing platform
TruSeq_SE5 5′-pGGTGACANNNNNAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT-SPACER 18-CTCGGCATTCCTGCTGAACCGCTCTTCCGATCTCCTTGGCACCCGAGAATTCCA-3′	Any		this protocol is only compatible with the Illumina sequencing platform
TruSeq_SE6 5′-pGGTAGACNNNNNAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT-SPACER 18-CTCGGCATTCCTGCTGAACCGCTCTTCCGATCTCCTTGGCACCCGAGAATTCCA-3′	Any		this protocol is only compatible with the Illumina sequencing platform
TruSeq_SE7 5′-pGGGCCCTNNNNNAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT-SPACER 18-CTCGGCATTCCTGCTGAACCGCTCTTCCGATCTCCTTGGCACCCGAGAATTCCA-3′	Any		this protocol is only compatible with the Illumina sequencing platform
TruSeq_SE8 5′-pGGATCGGNNNNNAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT-SPACER 18-CTCGGCATTCCTGCTGAACCGCTCTTCCGATCTCCTTGGCACCCGAGAATTCCA-3′	Any		this protocol is only compatible with the Illumina sequencing platform
TruSeq_SE9 5′-pGGACTGANNNNNAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT-SPACER 18-CTCGGCATTCCTGCTGAACCGCTCTTCCGATCTCCTTGGCACCCGAGAATTCCA-3′	Any		this protocol is only compatible with the Illumina sequencing platform
Typhoon 5 Bimolecular Imager	GE Healthcare Life Science	29187191