Skip to main content
. 2019 Aug 13;10:1779. doi: 10.3389/fmicb.2019.01779

TABLE 1.

Assembly statistics for the 26 individual genomes of the SynCom.

Total length (bp) GC (%) N50 L50 Largest scaffold (bp) Number of contigs Completeness (%)
Agrobacterium sp. B08 5,139,757 58.00 661,862 3 1,763,073 12 98.21
Agrobacterium sp. E09 5,111,565 58.04 962,894 2 2,483,670 10 98.35
Asticcacaulis sp. F02 4,090,317 59.82 2,090,444 1 2,090,444 10 99.68
Burkholderia sp. A10 7,529,582 61.95 339,575 7 908,583 52 99.11
Dyella sp. G12 4,436,342 67.34 346,514 5 726,443 22 99.66
Ensifer sp. D05 5,733,015 62.13 24,246 74 90,054 423 85.59
Ensifer sp. B04 6,604,253 62.30 679,195 4 1,406,070 28 99.96
Enterobacter sp. B02 4,872,541 55.56 2,747,184 1 2,747,184 11 98.78
Enterobacter sp. F08 4,873,968 55.56 2,743,932 1 2,743,932 13 98.78
Enterobacter sp. G08 4,869,404 55.56 2,743,932 1 2,743,932 10 98.78
Enterobacter sp. G12 4,871,164 55.56 2,743,932 1 2,743,932 12 98.78
Enterobacter sp. H03 4,871,546 55.56 2,743,932 1 2,743,932 12 98.78
Lysobacter sp. A02 5,979,448 69.88 3,943,671 1 3,943,671 8 99.80
Microbacterium sp. C05 4,324,063 70.84 1,052,134 2 1,135,406 6 98.99
Pantoea sp. B02 5,004,422 57.51 533,034 3 1,656,994 18 99.98
Pantoea sp. C12 4,999,713 57.51 532,800 3 1,655,413 15 99.98
Pedobacter sp. A01 5,669,447 39.66 558,813 3 1,410,374 23 98.09
Pedobacter sp. B08 4,711,081 38.41 2,498,014 1 2,498,014 5 97.61
Sphingomonas sp. D05 3,957,378 67.26 403,020 5 611,534 27 99.66
Stenotrophomonas sp. B02 4,557,168 67.11 457,915 4 853,121 18 100.00
Stenotrophomonas sp. E09 4,341,840 67.40 465,529 4 816,873 20 100.00
Streptomyces sp. G01 9,718,212 70.89 648,044 6 1,225,545 28 100.00
Un. Bradyrhizobiaceae C05 6,751,956 65.62 157,875 13 432,986 81 99.53
Un. Xanthomonadaceae B08 4,846,343 69.35 3,745 329 47,962 1,594 75.23
Un. Xanthomonadaceae G08 4,766,719 64.15 1,276,390 2 1,865,598 6 100.00
Variovorax sp. F04 6,878,903 65.44 1,432,711 2 2,046,624 29 99.30

Individual genomes were binned from 17 metagenomes of individual isolated communities and de novo assembled individually. Metrics for completeness was estimated using CheckM tool (Parks et al., 2015). bp, base pairs; Un., Unknown.