TABLE 1.
Assembly statistics for the 26 individual genomes of the SynCom.
Total length (bp) | GC (%) | N50 | L50 | Largest scaffold (bp) | Number of contigs | Completeness (%) | |
Agrobacterium sp. B08 | 5,139,757 | 58.00 | 661,862 | 3 | 1,763,073 | 12 | 98.21 |
Agrobacterium sp. E09 | 5,111,565 | 58.04 | 962,894 | 2 | 2,483,670 | 10 | 98.35 |
Asticcacaulis sp. F02 | 4,090,317 | 59.82 | 2,090,444 | 1 | 2,090,444 | 10 | 99.68 |
Burkholderia sp. A10 | 7,529,582 | 61.95 | 339,575 | 7 | 908,583 | 52 | 99.11 |
Dyella sp. G12 | 4,436,342 | 67.34 | 346,514 | 5 | 726,443 | 22 | 99.66 |
Ensifer sp. D05 | 5,733,015 | 62.13 | 24,246 | 74 | 90,054 | 423 | 85.59 |
Ensifer sp. B04 | 6,604,253 | 62.30 | 679,195 | 4 | 1,406,070 | 28 | 99.96 |
Enterobacter sp. B02 | 4,872,541 | 55.56 | 2,747,184 | 1 | 2,747,184 | 11 | 98.78 |
Enterobacter sp. F08 | 4,873,968 | 55.56 | 2,743,932 | 1 | 2,743,932 | 13 | 98.78 |
Enterobacter sp. G08 | 4,869,404 | 55.56 | 2,743,932 | 1 | 2,743,932 | 10 | 98.78 |
Enterobacter sp. G12 | 4,871,164 | 55.56 | 2,743,932 | 1 | 2,743,932 | 12 | 98.78 |
Enterobacter sp. H03 | 4,871,546 | 55.56 | 2,743,932 | 1 | 2,743,932 | 12 | 98.78 |
Lysobacter sp. A02 | 5,979,448 | 69.88 | 3,943,671 | 1 | 3,943,671 | 8 | 99.80 |
Microbacterium sp. C05 | 4,324,063 | 70.84 | 1,052,134 | 2 | 1,135,406 | 6 | 98.99 |
Pantoea sp. B02 | 5,004,422 | 57.51 | 533,034 | 3 | 1,656,994 | 18 | 99.98 |
Pantoea sp. C12 | 4,999,713 | 57.51 | 532,800 | 3 | 1,655,413 | 15 | 99.98 |
Pedobacter sp. A01 | 5,669,447 | 39.66 | 558,813 | 3 | 1,410,374 | 23 | 98.09 |
Pedobacter sp. B08 | 4,711,081 | 38.41 | 2,498,014 | 1 | 2,498,014 | 5 | 97.61 |
Sphingomonas sp. D05 | 3,957,378 | 67.26 | 403,020 | 5 | 611,534 | 27 | 99.66 |
Stenotrophomonas sp. B02 | 4,557,168 | 67.11 | 457,915 | 4 | 853,121 | 18 | 100.00 |
Stenotrophomonas sp. E09 | 4,341,840 | 67.40 | 465,529 | 4 | 816,873 | 20 | 100.00 |
Streptomyces sp. G01 | 9,718,212 | 70.89 | 648,044 | 6 | 1,225,545 | 28 | 100.00 |
Un. Bradyrhizobiaceae C05 | 6,751,956 | 65.62 | 157,875 | 13 | 432,986 | 81 | 99.53 |
Un. Xanthomonadaceae B08 | 4,846,343 | 69.35 | 3,745 | 329 | 47,962 | 1,594 | 75.23 |
Un. Xanthomonadaceae G08 | 4,766,719 | 64.15 | 1,276,390 | 2 | 1,865,598 | 6 | 100.00 |
Variovorax sp. F04 | 6,878,903 | 65.44 | 1,432,711 | 2 | 2,046,624 | 29 | 99.30 |
Individual genomes were binned from 17 metagenomes of individual isolated communities and de novo assembled individually. Metrics for completeness was estimated using CheckM tool (Parks et al., 2015). bp, base pairs; Un., Unknown.