TABLE 2.
Structural and functional features of the 26 individual genomes of the SynCom.
| Protein coding genes | tRNA | rRNA | Other RNAs | CRISPR elements | Protein with | Orthologs | Genes coding enzymes | Genes w/o function prediction (%) | |||||
| Number | Density (%) | COG | KO | pfam | tigrfam | ||||||||
| Agrobacterium sp. BO8 | 4,856 | 88.4 | 46 | 1 | 14 | 1 | 3,683 | 2,573 | 4,102 | 1,367 | 3,460 | 1,222 | 16.70 |
| Agrobacterium sp. E09 | 4,831 | 88.4 | 45 | 1 | 14 | 1 | 3,672 | 2,568 | 4,089 | 1,365 | 3,450 | 1,222 | 16.58 |
| Asticcacaulis sp. F02 | 3,739 | 90.0 | 45 | 4 | 10 | 0 | 2,486 | 1,829 | 3,024 | 1,073 | 2,257 | 1,001 | 20.46 |
| Burkholderia sp. A10 | 6,859 | 87.7 | 51 | 11 | 16 | 0 | 4,970 | 3,359 | 5,752 | 1,911 | 3,111 | 1,705 | 17.09 |
| Dyella sp. G12 | 3,862 | 89.8 | 46 | 5 | 7 | 3 | 2,714 | 1,983 | 3,237 | 1,262 | 2,683 | 1,024 | 16.99 |
| Ensifer sp. D05 | 5,760 | 86.6 | 54 | 8 | 21 | 0 | 3,961 | 2,611 | 4,706 | 1,352 | 3,781 | 1,239 | 19.60 |
| Ensifer sp. B04 | 6,209 | 87.1 | 53 | 3 | 19 | 0 | 4,721 | 3,153 | 5,286 | 1,584 | 4,042 | 1,516 | 16.57 |
| Enterobacter sp. B02 | 4,704 | 89.7 | 69 | 13 | 70 | 0 | 3,647 | 3,026 | 4,181 | 1,817 | 3,546 | 1,440 | 10.54 |
| Enterobacter sp. F08 | 4,704 | 89.7 | 71 | 15 | 70 | 0 | 3,648 | 3,027 | 4,182 | 1,817 | 3,546 | 1,440 | 10.46 |
| Enterobacter sp. G08 | 4,701 | 89.7 | 71 | 12 | 70 | 0 | 3,648 | 3,027 | 4,180 | 1,817 | 3,546 | 1,440 | 10.51 |
| Enterobacter sp. G12 | 4,703 | 89.7 | 71 | 13 | 70 | 0 | 3,647 | 3,026 | 4,182 | 1,817 | 3,546 | 1,439 | 10.48 |
| Enterobacter sp. H03 | 4,702 | 89.7 | 71 | 14 | 70 | 0 | 3,648 | 3,027 | 4,182 | 1,817 | 3,545 | 1,440 | 10.44 |
| Lysobacter sp. A02 | 4,941 | 85.8 | 60 | 4 | 6 | 2 | 3,013 | 2,081 | 3,734 | 1,258 | 2,915 | 1,068 | 25.62 |
| Microbacterium sp. C05 | 3,914 | 93.0 | 48 | 6 | 7 | 0 | 2,660 | 1,755 | 3,234 | 903 | 2,089 | 941 | 17.30 |
| Pantoea sp. B02 | 4,759 | 88.1 | 69 | 10 | 57 | 0 | 3,612 | 2,934 | 4,149 | 1,700 | 3,452 | 1,362 | 12.23 |
| Pantoea sp. C12 | 4,756 | 88.1 | 67 | 10 | 57 | 0 | 3,611 | 2,934 | 4,150 | 1,700 | 3,453 | 1,362 | 12.20 |
| Pedobacter sp. A01 | 4,906 | 88.3 | 52 | 6 | 105 | 3 | 2,472 | 1,607 | 3,594 | 1,142 | 2,697 | 911 | 24.85 |
| Pedobacter sp. B08 | 4,129 | 88.1 | 46 | 4 | 36 | 1 | 2,353 | 1,513 | 3,192 | 1,031 | 2,602 | 848 | 22.67 |
| Sphingomonas sp. D05 | 3,783 | 90.1 | 47 | 3 | 8 | 0 | 2,464 | 1,804 | 2,988 | 1,104 | 2,190 | 952 | 22.10 |
| Stenotrophomonas sp. B02 | 4,199 | 89.4 | 65 | 6 | 27 | 0 | 2,837 | 2,105 | 3,367 | 1,293 | 3,090 | 1,036 | 19.91 |
| Stenotrophomonas sp. E09 | 3,962 | 89.5 | 66 | 7 | 31 | 1 | 2,756 | 2,059 | 3,259 | 1,270 | 3,021 | 1,031 | 17.72 |
| Streptomyces sp. G01 | 8,864 | 89.7 | 72 | 15 | 11 | 3 | 5,381 | 3,058 | 7,005 | 1,703 | 2,906 | 1,703 | 20.93 |
| Un. Bradyrhizobiaceae C05 | 6,450 | 87.8 | 50 | 3 | 12 | 0 | 4,731 | 3,250 | 5,455 | 1,616 | 3,158 | 1,566 | 16.96 |
| Un. Xanthomonadaceae B08 | 5,563 | 88.2 | 47 | 1 | 8 | 0 | 2,530 | 1,794 | 4,183 | 1,263 | 2,491 | 962 | 25.51 |
| Un. Xanthomonadaceae G08 | 4,241 | 88.8 | 48 | 3 | 5 | 0 | 2,993 | 2,143 | 3,552 | 1,299 | 2,883 | 1,119 | 17.33 |
| Variovorax sp. F04 | 6,557 | 92.8 | 44 | 3 | 12 | 0 | 4,850 | 3,248 | 5,614 | 1,602 | 3,096 | 1,670 | 15.37 |
Un., Unknown.