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. 2019 Aug 14;10:1886. doi: 10.3389/fmicb.2019.01886

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Copyright © 2019 Choudhury, Middelkoop, Bolhuis and Kleerebezem.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Microbial community composition of sample types. (A,C) Relative abundance of Proteobacteria and Actinobacteria at day 7 and day 20. (B,D) Heat map of relative abundance of Proteobacteria and Actinobacteria at day 20 of all animals. (E,F) Relative abundance of the Trueperella genus and Pasteurellaceae family at day 20 among sample types. (G) LEfSe analysis identified Trueperella genus and Pasteurellaceae family as the only differentially abundant taxa among sample types (^*p < 0.05, ^**p < 0.01).