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. 2019 Aug 14;9:298. doi: 10.3389/fcimb.2019.00298

Table 1.

Statistical summary of the process of submission, QC, and features annotation in the MG-RAST web server of metagenomic sequences retrieved from tick gut microbiomes.

Stages Statistical parameter AVf AVm IPf IPm IOf IOm
Upload Base pair count (bp) 10 973 277 14 010 027 20 941 861 17 030 492 20 108 476 8 450 898
Sequences count 42 258 27 582 37 667 35 544 37 136 33 789
Sequence Length (bp) 260 ± 184 508 ± 81 556 ± 68 479 ± 114 541 ± 73 250 ± 173
GC proportion (%) 43 ± 7 55 ± 6 31 ± 8 54 ± 8 36 ± 4 47 ± 7
Post QC Base pair count (bp) 4 888 443 8 729 399 15 985 228 3 002 495 15 920 721 3 833 115
Sequences count 15 089 18 303 31 826 7 316 32 659 12 786
Sequence length (bp) 324 ± 198 477 ± 87 502 ± 73 410 ± 148 487 ± 75 300 ± 181
GC proportion (%) 41 ± 9 54 ± 6 31 ± 8 47 ± 13 36 ± 4 44 ± 9
Annoted Protein features 8 730 9 294 25 583 6 759 28 676 8 707
rRNA features 310 37 345 68 275 82
Bacteria domain (%)* 90.6 82.6 94.6 92.5 97.6 87.4
*

Proportion of features annotated as Bacteria domain, the rest corresponds to Eukaryote, Archaea, and Virus.