Table 1.
Stages | Statistical parameter | AVf | AVm | IPf | IPm | IOf | IOm |
---|---|---|---|---|---|---|---|
Upload | Base pair count (bp) | 10 973 277 | 14 010 027 | 20 941 861 | 17 030 492 | 20 108 476 | 8 450 898 |
Sequences count | 42 258 | 27 582 | 37 667 | 35 544 | 37 136 | 33 789 | |
Sequence Length (bp) | 260 ± 184 | 508 ± 81 | 556 ± 68 | 479 ± 114 | 541 ± 73 | 250 ± 173 | |
GC proportion (%) | 43 ± 7 | 55 ± 6 | 31 ± 8 | 54 ± 8 | 36 ± 4 | 47 ± 7 | |
Post QC | Base pair count (bp) | 4 888 443 | 8 729 399 | 15 985 228 | 3 002 495 | 15 920 721 | 3 833 115 |
Sequences count | 15 089 | 18 303 | 31 826 | 7 316 | 32 659 | 12 786 | |
Sequence length (bp) | 324 ± 198 | 477 ± 87 | 502 ± 73 | 410 ± 148 | 487 ± 75 | 300 ± 181 | |
GC proportion (%) | 41 ± 9 | 54 ± 6 | 31 ± 8 | 47 ± 13 | 36 ± 4 | 44 ± 9 | |
Annoted | Protein features | 8 730 | 9 294 | 25 583 | 6 759 | 28 676 | 8 707 |
rRNA features | 310 | 37 | 345 | 68 | 275 | 82 | |
Bacteria domain (%)* | 90.6 | 82.6 | 94.6 | 92.5 | 97.6 | 87.4 |
Proportion of features annotated as Bacteria domain, the rest corresponds to Eukaryote, Archaea, and Virus.