Table 1.
Gene Detection Accuracy
Not rounded | Rounded | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Data | Raw | Dr. | sc. | KNN. | LSMd | LSMn | Raw | Dr. | sc. | KNN. | LSMd | LSMn |
50K | 0.676 | 0.822 | 0.700 | 0.799 | 0.687 | 0.693 | 0.752 | 0.866 | 0.748 | 0.700 | 0.762 | 0.765 |
100K | 0.740 | 0.810 | 0.778 | 0.713 | 0.772 | 0.797 | 0.816 | 0.876 | 0.720 | 0.712 | 0.841 | 0.850 |
200K | 0.800 | 0.778 | 0.754 | 0.726 | 0.836 | 0.839 | 0.872 | 0.878 | 0.689 | 0.722 | 0.892 | 0.884 |
300K | 0.829 | 0.772 | 0.740 | 0.732 | 0.864 | 0.861 | 0.899 | 0.880 | 0.673 | 0.726 | 0.909 | 0.892 |
400K | 0.847 | 0.762 | 0.731 | 0.736 | 0.872 | 0.868 | 0.915 | 0.882 | 0.663 | 0.730 | 0.918 | 0.895 |
500K | 0.859 | 0.759 | 0.725 | 0.738 | 0.878 | 0.878 | 0.927 | 0.883 | 0.655 | 0.732 | 0.928 | 0.909 |
1M | 0.891 | 0.737 | 0.703 | 0.747 | 0.899 | 0.896 | 0.952 | 0.882 | 0.634 | 0.738 | 0.947 | 0.937 |
5M | 0.918 | 0.705 | 0.661 | 0.762 | 0.902 | 0.910 | 0.980 | 0.894 | 0.621 | 0.772 | 0.940 | 0.960 |
10M | 0.920 | 0.768 | 0.692 | 0.648 | 0.896 | 0.887 | 0.987 | 0.907 | 0.627 | 0.800 | 0.947 | 0.939 |
20M | 0.921 | 0.690 | 0.635 | 0.774 | 0.892 | 0.901 | 0.994 | 0.921 | 0.634 | 0.825 | 0.959 | 0.970 |
Bold values indicate highest accuracy at each sequencing depth.