TABLE 2.
Comparison of transcripts from genes coding for components of the Rnf and Mrp complexes in M. acetivorans cellsa
| Locus | Description | Gene | Fold upregulationb |
P | FDR |
|---|---|---|---|---|---|
| MA0659 | Electron transport complex protein RnfC | rnfC | 1.52 | 0.02 | 0.04 |
| MA0660 | Electron transport complex protein RnfD | rnfD | NS | ||
| MA0661 | Electron transport complex protein RnfG | rnfG | 1.66 | 0.006 | 0.01 |
| MA0662 | Electron transport complex protein RnfE | rnfE | 1.45 | 0.02 | 0.05 |
| MA0663 | Electron transport complex protein RnfA | rnfA | 1.66 | 0.006 | 0.01 |
| MA0664 | Electron transport complex protein RnfB | rnfB | 1.57 | 0.008 | 0.01 |
| MA4572 | Multisubunit sodium/proton antiporter, MrpA subunit | mrpA | 5.44 | 5.77 × 10–8 | 5.07 × 10–6 |
| MA4665 | Multisubunit sodium/proton antiporter, MrpB subunit | mrpB | 5.41 | 8.99 × 10–8 | 6.06 × 10–6 |
| MA4570 | Multisubunit sodium/proton antiporter, MrpC subunit | mrpC | 6.50 | 7.25 × 10–8 | 5.71 × 10–6 |
| MA4569 | Multisubunit sodium/proton antiporter, MrpD subunit | mrpD | 4.84 | 1.38 × 10–7 | 7.21 × 10–6 |
| MA4568 | Multisubunit sodium/proton antiporter, MrpE subunit | mrpE | 3.70 | 3.79 × 10–6 | 5.56 × 10–5 |
| MA4567 | Multisubunit sodium/proton antiporter, MrpF subunit | mrpF | 4.79 | 3.78 × 10–7 | 1.28 × 10–5 |
| MA4566 | Multisubunit sodium/proton antiporter, MrpG subunit | mrpG | 4.57 | 3.39 × 10–7 | 1.20 × 10–5 |
a
Cells were grown with methanol and AQDS in the presence of BES or were grown via methanogenesis with methanol as the substrate. Genes were only considered differentially expressed if the P value and FDR were ≤0.05. NS, no significant difference in read abundance.
b
That is, in AQDS/BES versus methanogenesis.