Table 1. Sequencing results and sample details.

Sample	Total reads	Trimmed reads	Aligned reads	Aligned reads after duplicates removed	% endogenous	Average read length (standard deviation) (bp)	Genomic coverage	SNPs on the Human Origins dataset	Deamination frequencies of terminal bases (5' side | 3' side)	Molecular sex (X+Y to Y chromosome reads ratio)
ACD259	672857	536219	458219	457922	68.06	52 (12)	0.0077X	5838	0.15 | 0.11	Male (0.0896)
ACD261	494484	411303	326321	326122	65.95	50 (13)	0.0053X	4086	0.17 | 0.13	Male (0.0846)
ACD750	663984	512278	446365	446036	67.18	53 (12)	0.0077X	5774	0.15 | 0.10	Male (0.0906)
Extractions negative control	1031	803	9	9	0.87
Library negative control	73	54	3	3	4.11
PCR negative control	56	35	1	1	1.79