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. 2019 Aug 22;20:436. doi: 10.1186/s12859-019-2967-2

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© The Author(s). 2019

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 11 — Example of Boa_g programs to compute different tasks on the full RefSeq dataset. The python programs were running on the single core. The Hadoop infrastructure on Bridges has 5 shared nodes with 32 mappers. While these queries can be written in parallel in python, this needs more lines of code and more programming skills to write a parallel code