Table 4.
List of top three most used assembly programs for Metazoa (Year < 2016)
Kingdom | Program Name | species | Total length | Scaffold-count | ScaffoldN50 | ContigCount | ContigN50 |
---|---|---|---|---|---|---|---|
Metazoa | SOAPdenovo | 98 | 1.2B ± 0.7B | 40 k ± 38 k | 4.5 M ± 13 M | 116 k ± 79 k | 42 k ± 48 k |
AllPaths | 54 | 1.5B ± 1.1B | 11 k ± 13 k | 7.4 M ± 9.7 M | 119 k ± 97 k | 38 k ± 32 k | |
Newbler | 18 | 0.9B ± 0.9B | 87 k ± 117 k | 2.1 M ± 2.3 M | 133 k ± 157 k | 34 k ± 27 k |