Skip to main content
. 2019 Aug 12;15(8):e1007652. doi: 10.1371/journal.ppat.1007652

Fig 4. Con-ARTIST and CompTIS-based classification of LEE genes and T3SS effectors.

Fig 4

(A) Artemis plots of reads in the LEE pathogenicity island in the control-simulated inoculum library (top) and a representative library recovered from the rabbit colon (middle). The genes in the LEE are displayed at the bottom. The key indicates which classification group each gene belongs: maroon genes belong to Group 1, which are classified as conditionally depleted (CD) by both Con-ARTIST and CompTIS; red genes belong to Group 2, which are classified as CD by CompTIS alone; orange genes belong to Group 3, which are classified as CD by Con-ARTIST alone; and gray genes belong to Group 4, which are not CD. (B) Schematic showing classification of the LEE genes and non-LEE-encoded effectors. Color key as above.