Table 4. The most abundant SSR repeat types in the transcriptome.
Mononucleotide | Dinucleotide | Trinucleotide | Tetranucleotide |
---|---|---|---|
A/T (52.21%) | AG/CT (14.73%) | AAG/CTT (2.58%) | ACAT/ATGT (0.45%) |
C/G (1.69%) | AT/AT (9.80%) | ATC/ATG (2.06%) | AAAT/ATTT (0.20%) |
AC/GT (7.99%) | AAT/ATT (1.92%) | AGAT/ATCT (0.10%) | |
CG/CG (0.03%) | AGC/CTG (1.66%) | AAAG/CTTT (0.07%) | |
ACC/GGT (1.13%) | AGGG/CCCT (0.07%) | ||
AGG/CCT (1.13%) | AAAC/GTTT (0.06%) | ||
AAC/GTT (0.59%) | AGCT/AGCT (0.05%) | ||
ACT/AGT (0.56%) | AACC/GGTT (0.04%) | ||
ACG/CGT (0.18%) | ACAG/CTGT (0.03%) | ||
CCG/CGG (0.13%) | ACTC/AGTG (0.03%) | ||
AGGC/CCTG (0.03%) |