4.1.
KEY RESOURCES TABLE
| REAGENT or RESOURCE | SOURCE | IDENTIFIER |
|---|---|---|
| Antibodies | ||
| Proseek Multiplex Inflammation I96×96 array | Olink Bioscience | article 94300 |
| Chemicals, Peptides, and Recombinant Proteins | ||
| DNeasy Blood and Tissue kit | QIAGEN | Cat# 69506 |
| Critical Commercial Assays | ||
| FGF-21 | R&D Systems | Cat# DF2100 |
| IL-6 | R&D Systems | Cat# D6050 |
| TNF-α | R&D Systems | Cat# DTA00C |
| Triglycerides | Thermo Fisher Scientific | TR22421 |
| Cholesterol | Thermo Fisher Scientific | TR13421 |
| Insulin | Thermo Fisher Scientific | KAQ1251 |
| NEFA-HR(2) Assay | Wako | 434–91795 |
| β-hydroxybutyrate | DiaSys Diagnostic Systems | 1 3701 99 10 930 |
| Folate | Roche Diagnostics USA | A98032 |
| Genotyping PNPLA3 rs738409 | TaqMan Applied Biosystems | ID: C_7241_10 |
| Genotyping TM6SF2 rs58542926 | TaqMan Applied Biosystems | ID: C_89463510_10 |
| Deposited Data | ||
| RNAseq liver data | NCBI Gene Expression Omnibus | GEO: GSE107650 |
| Metagenomics data | Sequence Read Archive | SRA: PRJNA420817 |
| Software and Algorithms | ||
| jMRUI v3.0 software | jMRUI | http://www.jmrui.eu/license-and-download/jmrui-license/ |
| LCModel v6.3g software | LCModel | http://www.lcmodel.com/lcmodel.shtml |
| DESeq2 | bioconductor | http://bioconductor.org/packages/release/bioc/html/DESeq2.html |
| Phyloseq (1.19.1) | bioconductor | https://bioconductor.org/packages/release/bioc/html/phyloseq.html |
| Goseq | bioconductor | https://bioconductor.org/packages/release/bioc/html/goseq.html |
| visreg | R | https://cran.r-project.org/web/packages/visreg/index.html |
| lme4 package | R | https://cran.r-project.org/web/packages/lme4/index.html |
| GRCh38 | Genome Reference Consortium | https://www.ncbi.nlm.nih.gov/grc/human |
| mixDIABLO | mixOmics | http://mixomics.org/mixDIABLO/ |