Table 2.
Details of genome size, % GC content, number of genes, % coding, number and relative abundance of SSRs in phytopathogenic prokaryotic organisms
| S. No. | Organism | Genome size (Mb) | % GC content | No. of genes | Total SSRs | Inter-genic (%) | Genic (%) | Relative abundance | Relative density |
|---|---|---|---|---|---|---|---|---|---|
| 1 | A. tumefaciens | 4.9 | 59.3 | 4617 | 281 | 17 (6.1) | 264 (93.9) | 57.3 | 718.7 |
| 2 | A. vitis | 5.0 | 57.6 | 4290 | 239 | 22 (9.2) | 217 (90.8) | 47.8 | 3027.0 |
| 3 | Acidovorax avenae | 5.4 | 68.5 | 4709 | 636 | 89 (14.0) | 547 (86.0) | 101.2 | 1602.8 |
| 4 | B. cenocepacia | 7.2 | 66.9 | 4061 | 703 | 306 (43.5) | 397 (56.5) | 96.9 | 1266.7 |
| 5 | B. glumae | 6.7 | 68.4 | 5366 | 1159 | 220 (19.0) | 939 (81.0) | 172.9 | 2291.3 |
| 6 | R. solanacearum | 3.7 | 67.0 | 3441 | 412 | 36 (8.7) | 376 (91.3) | 111.4 | 1436.2 |
| 7 | P. aeruginosa | 6.5 | 66.3 | 5892 | 376 | 24 (6.4) | 352 (93.6) | 57.6 | 768.9 |
| 8 | P. syringe | 6.4 | 58.4 | 5481 | 176 | 31 (17.6) | 145 (82.4) | 27.5 | 400.5 |
| 9 | X. axonopodis | 5.2 | 64.8 | 4312 | 408 | 74 (19.1) | 334 (81.9) | 78.9 | 1150.8 |
| 10 | X. campestris | 5.2 | 65.0 | 4271 | 448 | 81 (19.1) | 367 (81.9) | 86.9 | 1280.8 |
| 11 | X. oryzae | 4.9 | 63.7 | 4372 | 370 | 48 (13.0) | 322 (87.0) | 74.9 | 1065.7 |
| 12 | X. fastidiosa | 2.5 | 51.9 | 2104 | 183 | 55 (30.1) | 128 (69.9) | 73.8 | 900.8 |
| 13 | P. atrosepticum | 5.1 | 51.0 | 4494 | 149 | 15 (10.1) | 134 (89.9) | 29.4 | 401.9 |
| 14 | C. m. michiganensis | 3.2 | 72.6 | 2983 | 519 | 84 (16.2) | 435 (83.8) | 162.2 | 2183.7 |
| 15 | C. m. sepedonicus | 3.2 | 76.7 | 2941 | 528 | 105 (19.9) | 423 (80.1) | 165.0 | 2318.4 |
| 16 | L. xyli ssp. xyli | 2.6 | 67.7 | 2030 | 304 | 84 (27.6) | 220 (72.4) | 117.8 | 1592.7 |
| 17 | Onion yellow | 0.8 | 27.8 | 750 | 114 | 61 (53.5) | 53 (46.5) | 134.1 | 1897.5 |
| 18 | Aster yellow | 0.7 | 26.9 | 671 | 128 | 62 (48.4) | 66 (51.6) | 177.7 | 2457.1 |
| Lactobacillus casei (control) | 3.0 | 46.4 | 3047 | 68 | 15 (23.5) | 52 (76.4) | 7.5 | 274.3 | |
| Mean | 4.3 | 59.3 | 3675.3 | 379.0 | 75.2 | 303.7 | 93.7 | 1422.9 |