TABLE 1.
Assembly characteristics for the norovirus contigs obtaineda
| Isolate | GenBank accession no. | Polymerase genotypeb | Capsid genotypeb | ORF1 ntc | ORF2 ntc | ORF3 ntc | No. of norovirus reads/raw reads (%) | Coverage (×) | Genome coverage (%) (genome length [bp])d | GC content (%) | GenBank accession no. of most similar strain (nt lacking in the 5′ end) |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 3453 | MK789430 | GII.P2 | GII.2 | 1–5094 | 5075–6703 | 6703–7482 | 4,529,781/31,181,056 (14.5) | 2,675.12 | 99.9 (7,536/7,546) | 49.8 | MH218655 (GTGAATGAAG) |
| 3351 | MK789431 | GII.P17 | GII.17 | 1–5097 | 5078–6700 | 6700–7499 | 1,360,087/94,666,148 (1.4) | 2,587.67 | 99.9 (7,533/7,549) | 48.2 | KU561253 (GTGAATGAAGATGGCG) |
| 3587 | MK789432 | GII.P17 | GII.17 | 5–5113 | 5094–6716 | 6716–7495 | 67,237,010/70,923,098 (94.8) | 7,674.57 | 100 (7,558/7,558) | 48.1 | KT380915 |
| 3618 | MK789433 | GII.P17 | GII.17 | 1–5099 | 5080–6702 | 6702–7481 | 15,904,593/46,226,582 (34.4) | 6,316.85 | 99.8 (7,542/7,556) | 48.2 | KU561253 (GTGAATGAAGATGG) |
| 3546 | MK789434 | GII.P4 New Orleans 2009 | GII.4 Sydney 2012 | 1–5093 | 5074–6696 | 6696–7502 | 39,211,847/90,843,600 (46.1) | 7,716.42 | 99.9 (7,540/7,551) | 49.9 | MH218612 (GTGAATGAAGA) |
| 3549 | MK789435 | GII.Pe | GII.4 Sydney 2012 | 5–5104 | 5085–6707 | 6707–7513 | 90,198,955/90,548,480 (99.6) | 7,792.28 | 100 (7,569/7,569) | 49.6 | MH218701 |
| 3552 | MK789436 | GII.P4 New Orleans 2009 | GII.4 Sydney 2012 | 1–5090 | 5071–6693 | 6693–7499 | 68,287,930/88,189,676 (77) | 7,755.68 | 99.8 (7,536/7,550) | 49.8 | MH218612 (GTGAATGAAGATGG) |
a
nt, nucleotides.
b
Polymerase and capside genotypes were assigned using the norovirus genotyping tool (12).
c
The ORFs were automatically assigned by GenBank after sequence submission.
d
The total expected genome length is determined relative to the sequence annotated as “full genome” with the higher similarity after BLAST search.