Table 1.

Currently updated list of clinically relevant and known genes for schizophrenia analyzed by GeneAnalytics program.

Gene symbols (N = 608)
ABAT	BDNF	CSF2RB	FAM135B	GRIN2A	HTR5A	MEGF10	OXT	RGS4	STAC2
ABCA13	BIK	CSMD1	FAM69A	GRIN2B	HTR6	MGRN1	OXTR	RGS9	STT3A
ABCB1	BORCS7^a	CTLA4	FAM84A	GRIN2C	HTR7	MGST1	PAFAH1B1	RIMS1^a	STX1B
ACADVL	BRD1	CTNNA3	FEZ1	GRIN2D	ICAM1	NTAN1	PAH	RNF144A	STX6
ACE	BTN2A2	CTRL^a	FGF1	GRIN3A	IFITM3	NTF3	PAWR	RNF5	SULT4A1
ACHE	BTN3A1	CYBB	FGR	GRIN3B	IL10	NTNG1	PBRM1	RSRC1	SYN2
ACSL6	BTN3A2	CYFIP1^a	FMNL2	GRIP1	IL12B	NTRK1	PCGEM1	RTN4	SYN3
ACSM1	C12orf65	CYP17A1	FNBP1L	GRK3	ILIA	NTRK2	PCM1	RTN4R	SYNGR1
ADAMTSL3^a	C2orf82	CYP1A2	FOXP2	GRM2	IL1B	MICB	PCNT	RXRB	SYT11
ADCY1	CACNA1B	CYP2C19	FTCDNL1	GRM3	IL1RN	MIR137	PDE4B	S100A10	TAAR6
ADCY9	CACNA1C	CYP2D6	FXYD2	GRM4	IL3	MIR30E	PDLIM5	SIOOB	TACR1
ADCYAP1	CACNA1H	CYP3A4	FXYD6	GRM5	IL3RA	MKL1	PDYN	SATB2^a	TAF15
ADGRB3	CACNAl^a	CYP3A5	FYN	GRM7	IL4	MLC1	PEMT	SBK1	TAP2
ADIPOQ	CACNB2	DAO	FZD3	GRM8	IL6	MMP16	PER3	SDCCAG8	TBX1
ADORA2A	CACNG2	DAOA	GABBR1	GSK3A	IMMP2L	MMP9	PGBD1	SELENBP1	TCF4
ADRA1A	CAMKK2^a	DBH	GABRA1	GSK3B	IMPA2	MOXD1	PGP	SEMA3D	TF
ADRA2A	CAMK2B	DBNDD2	GABRA2	GSTM1	INSIG2	MPO	PHF3	SEZ6L2	TH
ADRA2C	CARTPT	DBP	GABRA4	GSTP1	IP05	MTHFR	PHOX2B	SF3B1^a	TLE1^a
ADRB3	CBS	DCDC2	GABRA6	GSTT1	ITIH3	MYH9	PI4KA	SGK1	TLE3^a
ADSS	CCDC68	DDC	GABRB2	GSTT2	ITIH4^a	MY016	PICK1	SHANK3	TIMELESS
AHCYL2	CCK	DGCR2	GABRB3	HCRTR1	JAG2	MY018B^a	PIK3C3	SHMT1	TMED5
AHI1	CCKAR	DGCR8	GABRG1	HERC2	JARID2	NAB2^a	PIP4K2A	SHOX	TMEM245
AKT1	CCL2	DGKI^a	GABRG2	HINT1	KCNB1^a	NALCN	PLA2G1B	SIGMAR1	TNF
AKT3	CD28	DGKZ^a	GABRG3	HIST1H2AG	KCNH2	NCAM1	PLA2G4A	SLC17A1	TNFRSF1B
ALDH3B1	CD46^a	DICER1	GABRP	HIST1H2BC	KCNH7	NCAN^a	PLA2G4C	SLC17A3	TNR
ALDH5A1	CDC42	DISCI	GABRR1	HIST1H2BD	KCNN3	NDE1	PLA2G4D	SLC17A6	TP53
AMBRAl^a	CDC42SE2	DISC2	GABRR2	HIST1H2BG	KDM3B^a	NDEL1	PLA2G6	SLC17A7	TPH1
ANK3	CDK6	DKK2	GAD1	HIST1H2BH	KIAA0513	NDST3^a	PLA2G7	SLC18A1	TPH2
ANKK1	CEACAM21	DLG1	GAD2	HIST1H2BI	KIAA1644	NETO1	PLAA	SLC18A2	TRIM26
APBA2	CERK	DLG2	GATAD2A^a	HIST1H2BJ	L1RE1	NEUROD2	PLP1	SLC1A1	TSNARE1
APOD	CHAT	DLG4	GBP2	HIST1H2BK	LAMA5	NEUROG1	PLXNA2	SLC1A2	TSNAX
APOE	CHD1	DNMT1	GBP4	HLA-A	LEP	NFATC3^a	PNOC	SLC1A3	TSPAN18^a
APOL1	CHGB	DOC2A	GCLC	HLA-B	LEPR	NKAPL^a	PODXL^a	SLC1A4	TSPAN33
APOL2	CHI3L1	DOCK4	GCLM	HLA-DQA1	LPL	NLGN1	POM121L2	SLC1A6	TXNDC5
APOL4	CHL1	DPP10	GDNF	HLA-DQB1	LRP1^a	NLRP1	PON1	SLC24A5	UBE3C
AR	CHRM1	DPYD	GFRA2	HLA-DRB1	LRRC4	NOD2	PPARG	SLC.38A 7^a	UFD1L
ARHGAP18	CHRM2	DPYSL2	GFRA3^a	HLA-DRB3	LSM1	NOS1	PPP1R1B	SLC39A8	UGT1A4
ARHGAP44	CHRM4^a	DR1	GJA5^a	HLA-DRB9	LTA	NOS1AP	PPP2R2B	SLC5A7	UHMK1
ARNTL	CHRM5	DRD1	GJA8^a	HNMT	M1AP	NOS3	PPP3CC	SLC6A2	VAMP4
ARRB2	CHRNA3	DRD2	GLIS2	HOMER1	MAD1L1	NOTCH2	PRKAB2	SLC6A3	VDR
ARVCF	CHRNA4	DRD3	GLOl	HOMER2	MAG	NOTCH3	PRKCA	SLC6A4	VIPR2
AS3MT	CHRNA5	DRD4	GLS	HP	MAGI1	NOTCH4	PRKCD	SLC6A9	VKORC1
ASCL1	CHRNA7	DRD5	GLUD1	HRH1	MAGI2	NPAS3	PRNP	SLC9A3R2	VRK2
ASTN2	CHRNB2	DRP2	GLUL	HRH2	MAGI3	NPPC	PRODH	SLCO6A1	WBP1L^a
ATF2	CLCN3^a	DTNBP1	GNB1L	HRH3	MAN2A1^a	NPY	PRODH2	SLX4	WWC1
ATE4	CLDN5	EFHD1^a	GNB3	HSPA1A	MAOA	NQOl	PRRT4	SMARCA2	XBP1
ATF5	CLINT1	EGF	GPHN	HSPA1B	MAOB	NR4A1	PRSS16	SMG6^a	XKR4
ATP2A2^a	CLOCK	EGR2	GPR50	HSPA1L	MAP2K4	NR4A2	PTBP3	SNAP25	YES1
ATP5A1	CLl^a	EGR3	GPR85	HSPA6	MAPK14	NRG1	PTGS2	SNAP29	YWHAE
ATXN1	CMYA5	ELK1	GPX1	HSPA7	MAPK3	NRG2	PTPN21	SNAP91^a	YWHAH
ATXN7^a	CNNM2	EML5	GRAMD4	HTR1A	MAPT	NRG3	PTPRZ1	SNX19	ZBTB42
ATXN8OS	CNP	EN2	GRIA1	HTR1B	MAU2	NRGN	QKI	SOD2	ZDHHC5^a
AUTS2	CNR1	EPC2^a	GRIA2	HTR1D	MCHR1	NRXN1	QPCT	SOX10	ZDHHC8
AXIN1	CNTF	ERBB3	GRIA3	HTR2A	MDGA1	NRXN3	RAI1	SP4	ZEB2
B3GNT2	CNTN4^a	ERBB4	GRIA4	HTR2C	MDK^a	NSD3	RANBP2	SP8	ZNF184
BARD1	CNTNAP2	ESR1	GRID1	HTR3A	MECP2	NSF	RAPGEF6	SRC	ZNF385D
BCL11B^a	CNTNAP5	FAAH	GRIK3	HTR3B	MED1	NTAN1^a	RELN	SRD5A1	ZNF804A
BCL2L13	COMT	FABP3	GRIK4	HTR3C	MED12	NT5C2	RENBP^a	SREBF1	ZSCAN31^a
BCL2L2	COMTD1	FABP5	GRIK5	HTR3D	MED15	NTRK3	RERE^a	SREBF2	ZSWIM6
BCL9	CPLX2	FABP7	GRIN1	HTR3E	MEF2C^a	NUDT9P1	REST	SRR
	CRKL			HTR4		NUMBL	RGS2	ST3GAL1
	CSF2RA					OLIG2		ST6GAL2
								ST8SIA2

Newly added genes (N = 52) to the master gene list in Butler et al. (2016a) as underlined and marked in bold.