Table 2. Influence of MCMB on the haplotype library for chromosome 1 in the KE DH-lines.
MCMB | Number of Blocks | Average block length (# of SNPs) | Haplotypes per Block | Coverage (%) |
---|---|---|---|---|
1 | 1720 | 1117 | 159.9 | 97.2 |
1,000 | 878 | 1892 | 132.1 | 96.5 |
2,500 | 621 | 2345 | 120.3 | 95.6 |
5,000 | 477 | 2575 | 114.9 | 94.4 |
10,000 | 362 | 3022 | 103.9 | 92.7 |
20,000 | 274 | 3339 | 99.2 | 90.1 |
50,000 | 150 | 3894 | 98.5 | 81.2 |