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. Author manuscript; available in PMC: 2019 Aug 25.

Published in final edited form as: Infect Genet Evol. 2018 Jun 28;72:59–66. doi: 10.1016/j.meegid.2018.06.029

Table 10:

Confusion Matrix of RuleTB with SNP clusters.

Sensitivity	Predicted Lineage												Overall accuracy: 78.8%
Sensitivity	LI	LII	LIIa	LIII	LIV	LV	LVI	LVII	LVIII	M. afri 1	M. afri 2	M. bovis	Overall accuracy: 78.8%
96.1%	49	0	1	0	0	0	0	0	0	1	0	0	LI	Actual Lineage
85.9%	0	61	0	1	8	0	1	0	0	0	0	0	LII
84.8%	1	0	28	3	0	1	0	0	0	0	0	0	LIIa
83.9%	0	0	1	47	0	0	0	8	0	0	0	0	LIII
26.1%	1	0	0	14	6	0	0	0	1	1	0	0	LIV
50.0%	0	0	0	2	1	4	0	1	0	0	0	0	LV
69.9%	0	5	1	2	0	1	51	12	0	1	0	0	LVI
86.8%	0	0	1	1	0	0	1	33	1	1	0	0	LVII
25.0%	0	0	0	0	0	0	0	3	1	0	0	0	LVIII
87.5%	0	0	0	0	0	0	0	0	0	7	1	0	M. afri 1
100%	0	0	0	0	0	0	0	0	0	0	2	0	M. afri 2
80.0%	0	0	0	1	0	0	0	0	0	0	0	4	M. bovis
	96.1%	92.4%	87.5%	66.2%	40.0%	66.7%	96.2%	57.9%	33.3%	63.6%	66.7%	100%	Specificity