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. Author manuscript; available in PMC: 2019 Aug 25.
Published in final edited form as: Infect Genet Evol. 2018 Jun 28;72:59–66. doi: 10.1016/j.meegid.2018.06.029

Table 12:

Confusion Matrix of StackTB with SNP clusters.

Sensitivity Predicted Lineage Overall accuracy: 92.7%
LI LII LIIa LIII LIV LV LVI LVII LVIII M. afri 1 M. afri 2 M. bovis
100% 51 0 0 0 0 0 0 0 0 0 0 0 LI Actual Lineage
100% 0 71 0 0 0 0 0 0 0 0 0 0 LII
90.9% 1 0 30 1 0 0 0 1 0 0 0 0 LIIa
94.6% 0 0 0 53 1 0 0 2 0 0 0 0 LIII
87.0% 1 0 0 1 20 0 0 1 0 0 0 0 LIV
75.0% 0 0 0 0 1 6 1 0 0 0 0 0 LV
87.7% 0 1 0 2 1 1 64 4 0 0 0 0 LVI
84.2% 0 0 0 3 2 0 1 32 0 0 0 0 LVII
100% 0 0 0 0 0 0 0 0 4 0 0 0 LVIII
87.5% 0 0 0 0 0 0 0 0 0 7 1 0 M. afri 1
100% 0 0 0 0 0 0 0 0 0 0 2 0 M. afri 2
100% 0 0 0 0 0 0 0 0 0 0 0 5 M. bovis
98.1% 98.6% 100% 88.3% 80.0% 85.7% 97.0% 80.0% 100% 100% 66.7% 100% Specificity