Table 3:

Rules used by RuleTB for each broad lineage, in order.

Rule	M. bovis	M. africanum	Indo-Oceanic	EAI	East-Asian	Euro-American
Rule 1	MIRU10 ≤ 2	MIRU24 ≥ 2	MIRU26 ≤ 3	MIRU16 ≥ 2	MIRU10 ≤ 4	MIRU31 ≤ 4
Rule 2	Mtub29 ≤ 3	3 ≤ MIRU26 ≤ 4	Mtub29 ≤ 3	MIRU31 ≥ 4	MIRU31 ≥ 4	MIRU39 ≤ 2
Rule 3	Mtub30 ≥ 3	Mtub 21 ≤ 6	Mtub30 ≤ 3	ETRC ≤ 2	MIRU40 ≤ 5
Rule 4	QUB4156 ≤ 1	ETRA ≤ 7		ETRA ≥ 3	QUB11b ≥ 2
Rule 5		QUB26 ≤ 7			Mtub30 ≥ 3