Table 7:

Rules used by RuleTB for each refined lineage, in order.

Rule	M. caprae	M. bovis	M. africanum 2	M. africanum 1	Indo-Oceanic	EAI	East-Asian	Euro-American
Rule 1	MIRU24 ≥ 2	MIRU10 ≤ 2	MIRU16 ≥ 3	MIRU23 ≤ 5	MIRU26 ≤ 4	MIRU10 ≥ 4	MIRU10 ≤ 3	MIRU31 ≤ 4
Rule 2	Mtub34 ≤ 2	Mtub29 ≤ 3	ETRA ≥ 6	MIRU24 ≥ 2	Mtub29 ≤ 3	MIRU16 ≥ 2	MIRU31 ≥ 4	MIRU39 ≤ 2
Rule 3	Mtub39 ≤ 1	Mtub30 ≥ 3	Mtub30 ≥ 4	MIRU40 ≤ 2	Mtub30 ≤ 3	MIRU31 ≥ 4	MIRU40 ≤ 5
Rule 4		QUB4156 ≤ 1	Mtub39 ≥ 4	QUB11b ≤ 6		Mtub04 ≥ 3	Mtub04 ≥ 2
Rule 5			QUB26 ≥ 6	QUB26 ≤ 6		Mtub21 ≥ 2	Mtub21 ≥ 3
Rule 6						ETRA ≥ 2	Mtub30 ≥ 2
Rule 7						Mtub29 ≥ 3	ETRB ≥ 2