Table 2. Peak SNPs associated with annualized percent change of CSF Aβ42.
CHR | SNP | Gene | Position | Function | A1/2 | MAF | βa | P value |
16 | rs13333659 | CBFA2T3 | 89038880 | Intron | T/G | 0.177 | −0.034 | 2.24×10−9 |
16 | rs57706252 | CBFA2T3 | 89030609 | Intron | C/T | 0.167 | −0.029 | 1.09×10−6 |
9 | rs35878400 | TRPM6 | 77482795 | Intron | T/C | 0.273 | 0.024 | 1.87×10−6 |
8 | rs6987191 | / | 138246221 | / | C/T | 0.131 | −0.031 | 6.99×10−6 |
17 | rs113685315 | RBFOX3 | 77390248 | Intron | A/G | 0.162 | 0.025 | 8.31×10−6 |
3 | rs55732227 | PDZRN3 | 73611629 | Intron | T/A | 0.309 | −0.020 | 9.86×10−6 |
Abbreviations: CHR = chromosome; SNP = single nucleotide polymorphism; MAF = minor allele frequency; A1/2 = minor allele/major allele.
a β effect size from GWAS means the annualized percent change of CSF Aβ42 conferred by one copy of the minor allele.